Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02021 ATGGAAAGCGGGTTTGGGGAATCGACGAGTAGGCAACCTCAAAGTCCTTCTTGTTCAGATAACAATGGTGATGCGAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCTTATGTGGTCATCTTTTCTGTTGGCCATGTCTTTATAAGTGGCTGCACATTCATTCTCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATTGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCTGGAATTAATATCCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCTCCAGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGACTTGGAGGGTTCGCCCCAATGGCATCGACGAGGTTTGGCAATTTTACTTTGTCTGCAGCTTTTGGTGGTCTCGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGCGCTAACTTTCCTTACGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCAGCTTCGTCAAGGTCAGCAAGATTACTATTTGAAGCGCCTGCTTTTCCTTATTGGTTTTTTTGTTCTTCTTGCCCTAATCTGGCAATAG 693 44.73 MESGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLFLIGFFVLLALIWQ* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18695130 18696653 - CsaV3_2G028400.1 Csa02g02021 520078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02021 230 SUPERFAMILY RING/U-box 26 83 - -
Csa02g02021 230 MobiDBLite consensus disorder prediction 1 20 - -
Csa02g02021 230 CDD RING-HC_AtRMA_like 28 72 - -
Csa02g02021 230 MobiDBLite consensus disorder prediction 84 122 - -
Csa02g02021 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Csa02g02021 230 Pfam Zinc finger, C3HC4 type (RING finger) 29 70 - -
Csa02g02021 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Csa02g02021 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Csa02g02021 230 SMART ring_2 30 70 IPR001841 -
Csa02g02021 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Csa02g02021 230 PANTHER OS12G0636000 PROTEIN 3 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02021 Csa-Chr2:18695130 Csa07g00439 Csa-Chr7:3162453 1.32E-29 dispersed
Csa03g02943 Csa-Chr3:28042945 Csa02g02021 Csa-Chr2:18695130 9.92E-24 transposed
Csa03g03565 Csa-Chr3:31876042 Csa02g02021 Csa-Chr2:18695130 1.69E-29 transposed
Csa02g02021 Csa-Chr2:18695130 Csa04g02351 Csa-Chr4:23932655 7.07E-30 wgd
Csa02g02021 Csa-Chr2:18695130 Csa06g02866 Csa-Chr6:24968539 5.44E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02021 K10666 - csv:101221027 435.261