Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02036 ATGGTATCGGCAGAGAATAATTCTCCAACAGCGACGGTTGCTGCATCTTCCCCGTCAGCAGTTGAAATCGAGACAATCGACACCGTGACTCCAGCAAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCAACTGCGGAGGTTATAGCTCTCTCGCCAAAATCGCTTCTAGCAACAAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAACTTCACAGGCGCGGCCACAACTTACCTTGGAAGCTCCGGCAAAGGACGAGCAATGAAATTCGAAAACGAGTCTACGTCTGTCCAGAACCTTCTTGCGTGCATCATAATCCGGCTAGGGCACTGGGTGATCTAACCGGCATTAAAAAGCACTTCTCTAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCCAAGAAATACGCCGTTCAATCGGATTGGAAAGCGCATATGAAAACCTGTGGGACTAGAGAATATAAATGCGATTGTGGAACTTTGTTTTCTAGGAGGGATAGTTTCATTACGCATCGGGCTTTTTGCGATGCTTTAGCGTTCGCAAGCTCGGATTCCAATGTTATTGCCGCCGCTGCCGCCGTCACAGCAGCGGTTGCTTCTTCGCCATTGGCCACCATGCCGGTGTCTCCTGGTTTGTCAATTCAAAGCTCAGAACCACCGGACATTCCCATGGGGCCTCCGCCATTAACACCAGCAGCGACAAGCTTAACCTCAGCCGTGGCCTCCACCGTTAACAAAACCTGCCAAACAAATGGCGGTGGAGCAAGCGTTTTCGCTGGTGTATTTTCTTCTTCTCCTCCCACTGTTACAAGTGCTCCCCCTAATCCGCCCCATCAACTCACCACCGGCGTCAACCGACCAGACGGTGGCAATGATCCCTCGACCACCGCCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTCTTCCTCTCATGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAGACCATACTCCACATTACTCTCTGTCGCCTCAGCCCGCCGCGATGTCCGCCACTGCCTTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCACCGCCTCCTCTTTGCTTCGTGCCTCTGGGTTATCGTTGTCGCAGTCTCCTGGCCCCGCCATCTCCATGACGGCTGGGCTCGGACTTGGATTCGGCAATGAACCCACCACGCGGGATCTCCTAGGACTGGGCATGGGCGGAGGAGGAGGAGGAGGTGGTGGGGTTTCCGGCAGTGGTATTTCTGCTCTTTTCTCGTCGTTTGATGGTTGTGACGTTGAAGCTGCCTCGCCTTACGGCGGCGGCGGGAGTAATGGGTTATGA 1377 54.25 MVSAENNSPTATVAASSPSAVEIETIDTVTPAKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVIAAAAAVTAAVASSPLATMPVSPGLSIQSSEPPDIPMGPPPLTPAATSLTSAVASTVNKTCQTNGGGASVFAGVFSSSPPTVTSAPPNPPHQLTTGVNRPDGGNDPSTTAIEPTSLSLSTSLFLSCRASASSGSTSASSIFQDHTPHYSLSPQPAAMSATALLQKAAQMGVTSSTASSLLRASGLSLSQSPGPAISMTAGLGLGFGNEPTTRDLLGLGMGGGGGGGGGVSGSGISALFSSFDGCDVEAASPYGGGGSNGL* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18764907 18768335 - CsaV3_2G028550.1 Csa02g02036 520093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02036 458 SMART c2h2final6 138 158 IPR013087 -
Csa02g02036 458 SMART c2h2final6 103 133 IPR013087 -
Csa02g02036 458 SMART c2h2final6 62 84 IPR013087 -
Csa02g02036 458 Gene3D Classic Zinc Finger 117 193 - -
Csa02g02036 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 442 - -
Csa02g02036 458 MobiDBLite consensus disorder prediction 276 310 - -
Csa02g02036 458 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 442 - -
Csa02g02036 458 MobiDBLite consensus disorder prediction 286 310 - -
Csa02g02036 458 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Csa02g02036 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Csa02g02036 458 Pfam Zinc-finger of C2H2 type 62 84 - -
Csa02g02036 458 Gene3D Classic Zinc Finger 62 105 - -
Csa02g02036 458 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02036 Csa-Chr2:18764907 Csa04g00519 Csa-Chr4:3406522 4.18E-116 dispersed
Csa07g01329 Csa-Chr7:13185682 Csa02g02036 Csa-Chr2:18764907 5.22E-26 dispersed
Csa07g01808 Csa-Chr7:18331491 Csa02g02036 Csa-Chr2:18764907 2.63E-87 dispersed
Csa02g02036 Csa-Chr2:18764907 Csa06g03225 Csa-Chr6:27277593 9.21E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30998 PF12874 zf-met 0.0032 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02036 K25869 - csv:101217471 804.668