Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02043 ATGGCCGGCCGCTTCGACTTTGGTTCTCGTCCCAATCTCTCTGTTTCCAGTCCTCTCCATGCTGCCAATGATGTTCAGGGATCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCTAAGCCAGGGGAGAGTAAGCATGGAATTGGAACTGGGGAAAACCATTTCAGTCATCAACCTGCTTATGGGAATCGCATGGACATGATGAAGGGATCTGAGAATTATGAGGATATGAATGACACACAAAAGAAGAAAGAAGTGTTTAGGCCATCCCTGACTGATTCCGAAACTGGTAGGCGTGACCGTTGGCATGATGAAGAAAGAGAAAATAATTCTTCAATGCGTAAAGATCGTTGGAGGGATGGTGAGAAAGAAATGGGTGACAGTCGCAAGATGGATCGTTGGAATGAAGACTCATCCACAAGAGTCTTTAGGGAATCTCGTCGAGGCCCATCAGAACGCTGGTCTGATTCAAATAATCGGGATAATGTTCATTATGATCAACGGCGTGAGAGCAAATGGAATACACGATGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGAGTGGACTCTGGAAGAGATGGTGATTTGCATCTTGACAAAAATTTCTCTCATGTGTCCAATTACGGGAAAAATGACAGAGATGGAGATCATTATCGCCCATGGAGGTCTAGTTCCGCTCAGGGTCGAGGTAAGGGAGAGCTGCCTCATCATCAAACCCAAACTCCAAGCAAACAAGTCCCTGCATTTTCCCATCGTGGACGTGCAGACAACACGCCTCCTACCTTCTCTTTAGGTCGTGGAATCATCAGTTCTGGTGTAAATCCTACCAATAGTATATATTCATCTCCCAATTATCTTGGAGCTTCTTCCGAGAAATCTGGAAGAGAGCCTTACTACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAATTTGACATCACAGCAAACTTTAAAAGATGTATTTGTGCCTGTGCCTACTCTTACACTGGATGAACCTTTGGAGCCTCTTGCTCTTTGTGCTCCCACTACGGAAGAAATGACTTTTCTGAAGGGGATTGATAAAGGGGAAATTGTTAGTAGTGGTGCACCTCAGGTGTCAAAGGATGGGCGAAACTCATCAGAATTTATGCAAGCAAGGCGAACAAAACTTGGTGTTTCACCTTCCCTAGGCAGTAGAGAAGATTTACCCCATGGGTTTGACGACTACAACGATGATAAAGATGACAGCACCACTAAACTTGGTCACACAAACTATTCAGAGGTCTCTACTGAGAGGCAGGTGCCTTATCACAGGCCACAGTCAAAAAATGAAGCCATTCAGGAGCAGATGGGACATACTAGTGGCACATTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTCTGAGAAAAACAGATGAGGTGCCCGGCAATAGGGAATCGAGTGTTAAGGGGGGTACCAATATTCATCCTAGCAGCACGTGGGATGCCTCATCACTTGAGCAACCCCTGAATACATCCTTACCTGATTGGAGAGACAATCCTAATAATATCATTAGCTCAGGAACTCCCGACAAGGGTTGGGTGCAGTCTTCAAAGAATCTTAATGATGGATGGGGAAGTAACGCAACTAATCCATCTTATGCGAAGGATAATTCTAAATGGCAGACCGCGGAGGAATCTATCCTTAGAAGGCAGCTTTCAGGGATTTTAGACAAGGAACAACTATCGCGGAAAACAGTTCAACCTGCTGCAGAGGATTTGCAACTTCATTATATTGATCCTTCTGGGGCAATTCAGGGCCCATTTGGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTGGATTTACCTGTCCGTCCGACAAATGCACCAAGTGACTTGCCATTTTCAGCACTTGGTGATGTTATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTAGTGGACCGAAGCAGAATGAATTTGCAGATTCATTAGGTAACCCTAGTTTTGGTAGCTTGGGGAAGCTTCATACTGGGTTGAATGAAATAGATACTTTGAGGAATGAGACAAGGCATAAACATGGCTCAACGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTTATGTCTGGAAATATAGGTTCTTCACCTCTCGAGAAGAGTGCCTTTTCTGAAGGTGTGCCAGGATATTTTGGAAATAATCCTAATAGTCTGTCTTCCTTGGGAATAGACAATGGAAATAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAACGGCAAAGGTCTTTGTCCAACCCTTATGCATTTTGGCCTGGAATAGATGCTACATCCAAGGTATCTAAGCCGGATATAGGCCTAGATGATCCAATTCAGCAGGCCAAACTCTTGTCTTCAATCATAGACCATTCTCGTCAAACTTCTCATTCTCAAAGTCCAGACATGTCAGCCATTCTACAAGGCTTATCTGACAAAGCACCTCCTGGCATTAATGAGGTTGCAGGGTGGTCAAAATTTTCTCATGCTCCCGACCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACTTACCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTGCAACCACAGCCGTCCTTGACAAATTTACTTGCCCAAGCTACTGATAATCCTACCTTAACTCCAGATAAGTTTCTTCCGTCCAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAGCAGCATTTGTTACAGTTGCATTCTCAAGTGCCTTTCTCTGCACAGCAAATGTCATTGTTAGACAAACTTTTATTACTTAAGCAGCAGCAGAAACAAGAAGAGCAACAACAGTTATTACAGCAACAACAGTTGCTCTCGCAGGTTCTATCAGAGCATCAGTCACGTCAGCATCTTATCGATCCATCTTTTGGACAGTTACAAGGTGCTCCTATACCTATTGGAAATGCATCTGCTGATCCATCTCAAGTTCAGCAACCACGAGAGAAATTTCAAATTGGTTCACAGAAGCCCTTAAATGTCGTAACGGATCGTGCGATTCCCTTTGGAAATATGGCTTTGCAAGTCACCCAGGGAGCCAGTTACAACGTTAATTCTGAAGATCCTTCCCTTGCTCTTCCACATCAAATGTTTGGAAATGTTCAGCAGAAGGGTTGGACTCCTGGTCTCCCAGAGCAGCTTACTGATACTCGTTCAAAAGATATGTTACCTGGATCTATAGTTGGTGAGGTCTCACTTTTTCCTGGGCTGACTAGCAAACCAAGCGAGGATGTGAGTCATGTACAGAAGTCATCTGATAGCCACACTATTCAAGCTTTGGAGCAGATAGGAGAGGATGTACCAAGGTTGGATGCAACTGCCACATCTCTTGCATCTGATGTCATGGTAGAACCTCTTCCTCTCAAGACTGCTGATATATCAGTTGCTCTACAACCAGCAGAAGTTCATGATATTGAAGTTTCCATTCCCGATAGTGTACCTGTTCTGAAGGTTCAAGAAGCTAGTATGCCTGTGCAAAAACTTGAAAGGGGTGGATGCAAAGATGATACCACCTTGGAGACAGAACTGAAAAATATTGAAGTACAGGAACCTAAAAAGCCTTCTGATAAAAAAACCAAGAAGCAAAAATCTTCTAAGTCACTTTCCTCAGACCAGGCCAAGGACTCTAAGAATTCTGCTATTCAGCAGTCAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGGCAGATAATATCATGGGAAAATCAAGTGATCTGGCTTCCTCTCCTCGGAAAATCAGAGATGGGGATGATGGCAAAATTTCCGTTGTAGACCATCAGCCAATTCAAAGCTCTGCCTCTGCTATGAATACCTGGAGCGATGGTGATACTGTTCAAGTAAAGGATGATGCCAGACTAGTTGGGTCCGATTCTGTCCTTAACTCACAGACTCAATCTGCCCAAAGAGCTTGGAAAGTTGCTTCGAGTTTCAAGCCAAAGTCGTTATTGGAAATTCAGGAGGAAGAGCAGAAAAGGGCACATACAGAAACGGCTGTATCAGAGATTTCCACTTCTATCACCTCTATGAGTTTATCAACTCCTTGGGCTGGGATTGTGAGCAGTTCAGACCCTAAAGCTTCCAAAGAAATTCATAAAGATTCTGTGATTTCAGAATCAAGTGAGAAACATGAAAATTTATTGATTTCAAAGATTAGAAGGAGCCAATTGCATGATCTACTGGCAGAAGACAATATGGAAAAGTCTGGTGCAAGTGATGTTCGTGTTTCTGACTCTGTACAGATTGCTTCTTCTCCTCGTGTTTTGGCCACACAGGCAGAACCCATGGATGACAATTTTATTGAGGCAAAAGACACCAAAAAGAGCCGCAAGAAGTCTGCCAAGGCTAAGGGTGTTGGTTCCAAGCCCTCCGCTCCAGTCCCTTCTGGCGATGTGCCTGTTGGTTCAAGTCCTAATGAGAAAGGGAAAATCTCCCGCCAAACCCAGCAGGAGAAGGAAGCAATGCCAGCCATTCCTTCTGGGCCTTCTTTTGGTGACTTTGTCCTCTGGAAGGGAGAAGTTGCTAACGTGGCCCCATCTCCAGCATGGTCCTCCAGTGACTCTGGGAAGGTCCCCAAACCCACTTCTTTGAGGGATATCCAGAAGGAGCAGGGAAGAAAAACCTCTGCTGCTCAGCATTCTCATCAAATCCCCACTCCCCAAAAGGGACAACCTAGTCAGGTTGGTCGCAGCAGCAGCACTAGTACTCCTTCCTGGGCTCTCTCTGCTTCTTCTCCATCAAAGGCTGCATCATCCCCCCTTCAGAATGTTCCTACTCAGTCAAATCATGGAGGAGACGATGACTTATTTTGGGGCCCCATTGAGTCAAAGAAAGAAAATCAGCAGGTTGATGTTCGTCTCGTGAGCAACAACTGGGGAAATAGGAATGCTCCTGCAAAAGCAGCTTCAACTGGGGTGTTAAGTCGCCAAAAATCATCTGGTGGCAAAGCTGACTATCTTTCATCCTCGCCGGCACAGTCATCTCAGAAAGGCAAACAAGATCCAGTTACCAAGCATTCAGAAGCTATGGGCTTCCGAGATTGGTGTGAGAGTGAATGTGAAAGGCTCATTGGGATAAAAGACACAAGTTTCTTGGAATTCTGCTTGAAGCAGTCGAGATCTGAGGCAGAGCTTTATTTAATAGAGAACCTTGGATCATATGATCCTGACCACGACTTCATCGATCAATTCCTAAATTACAAGGATTTGCTCCCAGCAGATGTTCTTGAAATTGCATTTCAAAGTCGCAACGACAGGAAGGTATCGGCTGTTGCTTCTCGAGAAGTAAATTCAGGCAATGCTGGTGGTGATCTGGACCCTGATGTCCCTGTTGGCCGGGATGGGTCTGCAAAGAGTGGAGGAAAGAAGAAAGGAAAGAAAGGGAAGAAGGTTAATCCATCAGTTTTGGGTTTCAATGTAGTTAGTAACCGAATCATGATGGGCGAGATTCAGACTGTTGAAGATTAG 5544 44.44 MAGRFDFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGIGTGENHFSHQPAYGNRMDMMKGSENYEDMNDTQKKKEVFRPSLTDSETGRRDRWHDEERENNSSMRKDRWRDGEKEMGDSRKMDRWNEDSSTRVFRESRRGPSERWSDSNNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSAQGRGKGELPHHQTQTPSKQVPAFSHRGRADNTPPTFSLGRGIISSGVNPTNSIYSSPNYLGASSEKSGREPYYYKYSRTKLLDVFRTTNLTSQQTLKDVFVPVPTLTLDEPLEPLALCAPTTEEMTFLKGIDKGEIVSSGAPQVSKDGRNSSEFMQARRTKLGVSPSLGSREDLPHGFDDYNDDKDDSTTKLGHTNYSEVSTERQVPYHRPQSKNEAIQEQMGHTSGTFKSEAFREDDNALRKTDEVPGNRESSVKGGTNIHPSSTWDASSLEQPLNTSLPDWRDNPNNIISSGTPDKGWVQSSKNLNDGWGSNATNPSYAKDNSKWQTAEESILRRQLSGILDKEQLSRKTVQPAAEDLQLHYIDPSGAIQGPFGGADIIQWFEGGYFGLDLPVRPTNAPSDLPFSALGDVMPHLRSKAKPPPGFSGPKQNEFADSLGNPSFGSLGKLHTGLNEIDTLRNETRHKHGSTVEAENRFLESLMSGNIGSSPLEKSAFSEGVPGYFGNNPNSLSSLGIDNGNNLFLLAKRMELERQRSLSNPYAFWPGIDATSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHSQSPDMSAILQGLSDKAPPGINEVAGWSKFSHAPDPLQSKLDLHHDLNLPSQAPFGFQQQRLQPQPSLTNLLAQATDNPTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQQLLSQVLSEHQSRQHLIDPSFGQLQGAPIPIGNASADPSQVQQPREKFQIGSQKPLNVVTDRAIPFGNMALQVTQGASYNVNSEDPSLALPHQMFGNVQQKGWTPGLPEQLTDTRSKDMLPGSIVGEVSLFPGLTSKPSEDVSHVQKSSDSHTIQALEQIGEDVPRLDATATSLASDVMVEPLPLKTADISVALQPAEVHDIEVSIPDSVPVLKVQEASMPVQKLERGGCKDDTTLETELKNIEVQEPKKPSDKKTKKQKSSKSLSSDQAKDSKNSAIQQSKQSKSGKSENDLKLKADNIMGKSSDLASSPRKIRDGDDGKISVVDHQPIQSSASAMNTWSDGDTVQVKDDARLVGSDSVLNSQTQSAQRAWKVASSFKPKSLLEIQEEEQKRAHTETAVSEISTSITSMSLSTPWAGIVSSSDPKASKEIHKDSVISESSEKHENLLISKIRRSQLHDLLAEDNMEKSGASDVRVSDSVQIASSPRVLATQAEPMDDNFIEAKDTKKSRKKSAKAKGVGSKPSAPVPSGDVPVGSSPNEKGKISRQTQQEKEAMPAIPSGPSFGDFVLWKGEVANVAPSPAWSSSDSGKVPKPTSLRDIQKEQGRKTSAAQHSHQIPTPQKGQPSQVGRSSSTSTPSWALSASSPSKAASSPLQNVPTQSNHGGDDDLFWGPIESKKENQQVDVRLVSNNWGNRNAPAKAASTGVLSRQKSSGGKADYLSSSPAQSSQKGKQDPVTKHSEAMGFRDWCESECERLIGIKDTSFLEFCLKQSRSEAELYLIENLGSYDPDHDFIDQFLNYKDLLPADVLEIAFQSRNDRKVSAVASREVNSGNAGGDLDPDVPVGRDGSAKSGGKKKGKKGKKVNPSVLGFNVVSNRIMMGEIQTVED* 1848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18788361 18798179 - CsaV3_2G028620.1 Csa02g02043 520100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1385 1402 - -
Csa02g02043 1847 Pfam GYF domain 595 630 IPR003169 GO:0005515
Csa02g02043 1847 MobiDBLite consensus disorder prediction 425 460 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 392 532 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 649 673 - -
Csa02g02043 1847 ProSiteProfiles GYF domain profile. 591 642 IPR003169 GO:0005515
Csa02g02043 1847 MobiDBLite consensus disorder prediction 405 424 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1378 1402 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1285 1303 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1268 1282 - -
Csa02g02043 1847 SMART gyf_5 592 650 IPR003169 GO:0005515
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1537 1635 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1783 1825 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 10 33 - -
Csa02g02043 1847 CDD GYF 591 648 IPR003169 GO:0005515
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1181 1303 - -
Csa02g02043 1847 Gene3D - 579 660 IPR035445 -
Csa02g02043 1847 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1847 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1648 1692 - -
Csa02g02043 1847 SUPERFAMILY GYF domain 581 648 IPR035445 -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1 270 - -
Csa02g02043 1847 Coils Coil 948 968 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1227 1245 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1499 1513 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1185 1226 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1444 1525 - -
Csa02g02043 1847 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1847 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 462 482 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 485 532 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1648 1698 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 1569 1622 - -
Csa02g02043 1847 MobiDBLite consensus disorder prediction 71 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02043 - - - csv:101216765 3492.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02043 Csa-Chr2:18788361 Csa06g00798 Csa-Chr6:6417753 2.02E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44