Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02045 ATGGCTTCTTTAATATCTGACACCGATGCATGGAAGAATCTGAAGGCTCATGTTGAGGACATTAACAAGACCCATCTGCGTGATTTGATGAGCGATGCTGCCAGATGCAATTCCTTGATGGTTGAGTATGATGGGATTTTGTTGGATTATTCACGACAAAGGGCCACCTCTGACACCATTGGAAAGCTCTTCAAATTGGCAGAGGCGGCAAATCTCAAGGAAAAAATTAATCGGATGTACAATGGGGAACATATAAACAGCACAGAAAATAGGGCAGTCCTGCATGTTGCTCTTCGTGCACCTAGAGATGCAACGATACAAAGTAACGGAAAGAATGTTGTGCCTGATGTTTGGAACGTTCTTGATAAGATTCAGGATTTCTCTGAGAAAGTTCGCAATGGTTCTTGGGTTGGAGCCACAGGAAAACCTCTGAAGGACGTTGTTGCTATTGGCATTGGTGGCAGCTTCTTGGGGCCTCTGTTTGTACACACTGCACTTCAAACAGATCCAGAGGCTATTAAATCTGCAGAAGGACGTCAATTACATTTAAGATTTGTGGTTCTGCATTTTCACCATTTTGCGCTACTGGGAAATGGGAATCAGGCTGACAGAGTTCATCATTTTCTGTGCTATGTTTACAGTCTTGCTAATGTGGATCCCATTGATGTGGCGAAAAATATCACTGGTTTAAACCCTGAAACTACTTTGGTTGTGGTGGTTTCAAAGACTTTTACCACTGCTGAAACTATGTTAAATGCCCGGACACTAAGGGAGTGGATTTCTGCAGCTCTTGGGCCTTCAGCTGTTGCAAAGCATATGGTAGCAGTTAGCACAAACCTCCCGCTTGTAGAGAAGTTTGGAATTGATCCTAATAATGCCTTTGCATTCTGGGACTGGGTTGGTGGACGGTACAGTGTTTGCAGTGCTGTAGGAGTGTTGCCTTTGTCTCTTCAATATGGCTTCGCTGTTGTTGAAAAATTCTTGAAGGGAGCTTCCAGCATTGACCAGCATTTCTATTCCTCTCCTTTTGAGAAAAATATTCCAGTGCTTTTGGGATTGTTGAGCGTATGGAATGTTTCTTTTCTTGGGCATGCTGCAAGAGCCATCTTACCTTATTCCCAGGCTTTGGAGAAGTTTGCTCCACACATTCAGCAGGTTAGCATGGAGAGTAATGGCAAGGGTGTTTCAATTGATGGGGTTCCACTCCCTTTTGAGGCTGGAGAAATCGACTTTGGGGAACCTGGAACAAACGGCCAACACAGTTTTTACCAACTAATTCACCAAGGGCGTGTTATTCCTTGTGATTTTATTGGTGTTGTAAAGAGCCAGCAACCCGTTTACTTAAAAGGTGAGGTCGTGAGTAATCATGATGAACTCATGTCGAACTTCTTTGCACAGCCCGATGCCCTAGCCTATGGGAAGACTCCAGAGCAATTGCATAAGGAGAATGTTCCAGAGCATCTTATTTCCCACAAGGTAACACTTCGATCTTTACTGCTATCTATCATTTTGTATTGGATTCAACAACCTAACTCTATTCCTTCTCTTCAGACATTTTCTGGAAATCGCCCTTCTCTAAGCATTCTTCTTCCGTCATTAAATGCTTACAACATTGGTCAGTTGCTAGCAATCTATGAACATAGAATTGCTGTAGAAGGATTTGTTTGGGGCATCAATTCCTTTGACCAGTGGGGAGTTGAATTGGGCAAGTCGCTTGCTACCCAGGTTAGGAAACAGCTCAGTGCATCTAGAACAAAGGGAGAACCAATTGAAGGCTTTAACCACAGTACAACAACATTGTTGAAAAGATATTTAGAGGCGAGTTCAGATGTACCATCTGATCTCCCTACTCTTCTACCCAGAATTTAA 1869 43.12 MASLISDTDAWKNLKAHVEDINKTHLRDLMSDAARCNSLMVEYDGILLDYSRQRATSDTIGKLFKLAEAANLKEKINRMYNGEHINSTENRAVLHVALRAPRDATIQSNGKNVVPDVWNVLDKIQDFSEKVRNGSWVGATGKPLKDVVAIGIGGSFLGPLFVHTALQTDPEAIKSAEGRQLHLRFVVLHFHHFALLGNGNQADRVHHFLCYVYSLANVDPIDVAKNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISAALGPSAVAKHMVAVSTNLPLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFAVVEKFLKGASSIDQHFYSSPFEKNIPVLLGLLSVWNVSFLGHAARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAYGKTPEQLHKENVPEHLISHKVTLRSLLLSIILYWIQQPNSIPSLQTFSGNRPSLSILLPSLNAYNIGQLLAIYEHRIAVEGFVWGINSFDQWGVELGKSLATQVRKQLSASRTKGEPIEGFNHSTTTLLKRYLEASSDVPSDLPTLLPRI* 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18802010 18807672 - CsaV3_2G028640.1 Csa02g02045 520102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02045 622 CDD SIS_PGI_2 366 576 IPR035482 -
Csa02g02045 622 Gene3D - 116 319 - -
Csa02g02045 622 PRINTS Glucose-6-phosphate isomerase signature 372 393 IPR001672 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 PRINTS Glucose-6-phosphate isomerase signature 147 166 IPR001672 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 Hamap Glucose-6-phosphate isomerase [pgi]. 43 580 IPR001672 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 5 608 - -
Csa02g02045 622 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 8 607 IPR001672 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 Gene3D - 2 115 - -
Csa02g02045 622 CDD SIS_PGI_1 118 317 IPR035476 -
Csa02g02045 622 ProSitePatterns Phosphoglucose isomerase signature 2. 553 570 IPR018189 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 5 608 IPR001672 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 Gene3D - 563 608 IPR023096 GO:0004347|GO:0006096
Csa02g02045 622 Gene3D - 322 562 - -
Csa02g02045 622 Pfam Phosphoglucose isomerase 49 173 IPR001672 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 Pfam Phosphoglucose isomerase 212 601 IPR001672 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 ProSitePatterns Phosphoglucose isomerase signature 1. 298 311 IPR018189 GO:0004347|GO:0006094|GO:0006096
Csa02g02045 622 SUPERFAMILY SIS domain 6 608 IPR046348 GO:0097367|GO:1901135
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02045 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - csv:101217944 1094.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02045 Csa-Chr2:18802010 Csa02g02223 Csa-Chr2:19972001 7.29E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g932 Blo01g01559 . Bda01g00534 . Bpe02g00396 . . Bma01g02316 Cmo05g00243 Cmo12g00427 . . . Car12g00451 . . Cpe07g00429 Bhi04g00254 . . . . . . Cla08g01496 Cam08g1986 Cec08g1561 Cco08g1698 Clacu08g1676 . Cre08g1459 Cone4ag1905 Cone7ag1820 . . . . . Cme03g01964 . . . . . . . . . . . Cma12g00477 Cma05g00235 Car05g00195 . Cpe11g00194 . . . . . . . . . . . . . . . Lsi08g01401 Csa02g02045 Chy03g01468 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004710 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 40