Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02049 ATGTCCCTCTCTTCACGCTCCGCAAAGCTCACCATTCTAGCTCTTCTCTCCGCCTCTACTTTGTATTGTTTCTACAAGTCCCGCCGTCTCAGAAAGCTTAAACTCTCATTAAACCCTACTCTTCCTTCTCGCAAACCGAAACTGTTTTTCATTTCTCAAACTGGTACCTCCAAGGCCCTAGCTCATCGTCTGCTCAACGTTTTGAATTCCAATGGGTTGGTTTTCGATCTTGTTGATCCCAAGGATTACGAGCCTGAGGATCTTTTTAAGGAAACTTTAGTTTTGTTTGTTGCTTCCACTTGGGAAGACGGAGGACCGCCTCCTCATGCTAAATTTCTCGCTAACTGGCTATCTGAAAGCGCGGAGGATTTTAGAGTTGGTTCGTTGTTGCTTTCTCAGTGTAAGTTTTCTGTGTTTGGGGTTGGTAGTCGAGTTTATGGAGAGACATTCAATGCGGTTGCAAGGGATTTTTCCAAGCGGTTGAAGGCATTGGGTGCGAAGGAGATTTTACCGATTGGTGAAGGAGACGTGGATGGAGGTGATATAGATAAGTGTTTTGATGATTGGAGTAGGAAATTGCTGAAGGTTATGAAGTTTGATGCCGAGGGAAATGGGGTGGAGTTATGTTCTGGGATAGCTGGGGACAGTGATGCTGTAAGTGTTGAGGAGGATGAAGAAGAAGATGACGACCTTGGGGAGGAGGATATCGTTGATCTTGAGGATATTGCCGGTAAGGGCCCTTCGAGAAAGTCTACGAATATAGTTGAAACTAATGGGAAATTGAATGGGAAAAAGGTTATGGTGACCCCGGTGATTAGAGCGAGCTTGGAAAAGCAGGGATATAAAATTATTGGCTCACATAGCGGAGTAAAAATATGTAGATGGACGAAGTCTCAGCTTCGAGGACGAGGAGGTTGCTATAAACATTCATTTTATGGCATAGAAAGTCATCGATGCATGGAGGCAACTCCCAGTTTGGCTTGTGCCAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGAAAGAGCTGGCAGTGGGAGATGGATGATCCATTGGAAATTGTGAATTCTGCAATAGATTTACACACAAAGATGATCAAGCAAATGAAAGGTGTTCCGGGTGTTACGCAGGAGAAATTGGAGGAAGGCCTGTCTCCAAGACATTGTGCCTTATCTCTTGTTGGTGAACCTATTATGTACCCAGAGATTAATACACTTGTTGATGAATTGCATCGAAGGCGGATTTCAACTTTCTTGGTGACAAATGCTCAGTTTCCTGATAAAATAAAATTGCTGAAGCCGGTCACCCAGTTGTATGTAAGTGTAGATGCTGCGACGAAGGAGAGCTTGAAGGCAATTGATAGACCACTTTTTGGGGATTTCTGGGAGCGATTCATTGATTCTTTGAAAGCTCTAAATGAAAAGCAACAGCGAACAGTTTATCGATTGACGTTGGTGAAGGGGTGGAACACAGAAGATATCGATGCATATTCGAATCTCTTTAGCATTGGTAGACCTGATTTTGTAGAAATCAAGGGCGTCACATATTGTGGATCATCTACTACATCAAAGCTGACAATGGAGAATGTTCCTTGGCATTCTGATGTGAAGTCTTTTTCGGAGGCTTTAGCTGCAAAAAGTCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTGCACTCGTGTTGCGTTCTTTTAGCTAAAACTGACAAGTTTAGGGTCGATGGCCAGTGGTTCACTTGGATAGATTACGATAAATTCCATGACCTGGTGGCCTCTGGAAAACCTTTTGATAGCAAGGACTACATGGCTCCAACACCATCATGGGCTGTATATGGCTCTGACGAAGGTGGATTTGATCCTGATCAATCTCGATACAGGAAGGAGCGACATCATAAACCAAAACCCACATCCTGA 1923 43.79 MSLSSRSAKLTILALLSASTLYCFYKSRRLRKLKLSLNPTLPSRKPKLFFISQTGTSKALAHRLLNVLNSNGLVFDLVDPKDYEPEDLFKETLVLFVASTWEDGGPPPHAKFLANWLSESAEDFRVGSLLLSQCKFSVFGVGSRVYGETFNAVARDFSKRLKALGAKEILPIGEGDVDGGDIDKCFDDWSRKLLKVMKFDAEGNGVELCSGIAGDSDAVSVEEDEEEDDDLGEEDIVDLEDIAGKGPSRKSTNIVETNGKLNGKKVMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPLEIVNSAIDLHTKMIKQMKGVPGVTQEKLEEGLSPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLKALNEKQQRTVYRLTLVKGWNTEDIDAYSNLFSIGRPDFVEIKGVTYCGSSTTSKLTMENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYDKFHDLVASGKPFDSKDYMAPTPSWAVYGSDEGGFDPDQSRYRKERHHKPKPTS* 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18817580 18824126 - CsaV3_2G028680.1 Csa02g02049 520106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02049 640 SUPERFAMILY Flavoproteins 44 197 IPR029039 -
Csa02g02049 640 Pfam Radical SAM superfamily 324 502 IPR007197 GO:0003824|GO:0051536
Csa02g02049 640 SUPERFAMILY Radical SAM enzymes 325 504 - -
Csa02g02049 640 Pfam Wyosine base formation 507 570 IPR013917 -
Csa02g02049 640 Gene3D - 26 205 IPR029039 -
Csa02g02049 640 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 2 635 IPR034556 GO:0008033|GO:0051539
Csa02g02049 640 Gene3D Aldolase class I 251 582 IPR013785 -
Csa02g02049 640 Pfam Flavodoxin 48 189 IPR008254 GO:0010181
Csa02g02049 640 ProSiteProfiles Radical SAM core domain profile. 312 555 IPR007197 GO:0003824|GO:0051536
Csa02g02049 640 SFLD tRNA wybutosine-synthesizing 263 575 IPR034556 GO:0008033|GO:0051539
Csa02g02049 640 SFLD tRNA wybutosine-synthesizing 263 575 - -
Csa02g02049 640 CDD Radical_SAM 324 496 - -
Csa02g02049 640 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 2 635 - -
Csa02g02049 640 PRINTS Flavodoxin signature 47 60 IPR001094 GO:0010181
Csa02g02049 640 PRINTS Flavodoxin signature 95 106 IPR001094 GO:0010181
Csa02g02049 640 PRINTS Flavodoxin signature 133 143 IPR001094 GO:0010181
Csa02g02049 640 PRINTS Flavodoxin signature 158 177 IPR001094 GO:0010181
Csa02g02049 640 MobiDBLite consensus disorder prediction 602 640 - -
Csa02g02049 640 ProSiteProfiles Flavodoxin-like domain profile. 46 194 IPR008254 GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02049 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] - csv:101217239 1244.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02049 Csa-Chr2:18817580 Csa04g00430 Csa-Chr4:2701428 2.98E-08 dispersed
Csa02g02049 Csa-Chr2:18817580 Csa01g02153 Csa-Chr1:18677514 5.01E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34