Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02065 ATGTCTCGTCCGAGTTTTTTACTTGCTATTAGTGTTATTGCGGCGGTCTTAGTGGCAGAGGTTACGGCAGCGGCGGTAACTACGGCGGTTTTGATAACCGTGGATCAATCTGGGAAGGGGAACTTTACGAAGATTCAACAGGCGATTGATGCAGTGCCGATAAATAACAAGGAGGAAGTGTTTATTTCGGTGAAGGCGGGGATTTATAGAGAGAAGGTGGTGGTTCCGGCGAATAAACCGTTCATTACTATAAGTGGAAGAAGAGCGGTGGATACGATCATCAGTTGGAATGATAGCAAGAATACTTATAATTCTGCAACTCTTGCAGTTTTGGCCTCTGATTTCGTTGGACGATATCTCACAATTCAGAATGGATACGGGCCGGGTGCACAAGCAGTGGCCTTACGAGTATCTGGAGATAGAGTATCATTTACAGCATGTAGATTTTTAGGCCATCAAGACACTCTCCTAGATGACATTGGTCGTCATTACTACAAAAGTTGTTACATCCAAGGAGCCACCGATTTCATATGTGGAAACGCAGCTTCATTGTTCGAGAATTGCCACCTACGGTCAGTTTCGGAGGACGTCGGGACAATCACAGCCCAACGGAGAGAATCACCATCGGAGAATACAGGGTTCGTATTCATGGGGTGTAAGATCACGGGAATAAACTCGGCGGTTTTAGGAAGGCCGTGGGGAGCATTCTCTAGAGTCGTGTTTGGATTCACTTTCATGTCGGACGTTATTCTCCCGGAGGGTTGGGATAATTGGCAAGACCCATCCAAACAAAGTACGGTTTACTATGGGCAATACAAATGTTATGGAAAAGGAGCAAATACTTCGAGAAGGGTATCGTGGTCATTTACTAACATGACTGCCCAAGATGCTGCACCATTTTTCACTAAATCCTTCATTGGTGCTGCTGATTGGCTCAGGCCGGTGCCGAATCGTTTCAAGAGAGCCTTCTCTTCACATCCCTAA 984 45.93 MSRPSFLLAISVIAAVLVAEVTAAAVTTAVLITVDQSGKGNFTKIQQAIDAVPINNKEEVFISVKAGIYREKVVVPANKPFITISGRRAVDTIISWNDSKNTYNSATLAVLASDFVGRYLTIQNGYGPGAQAVALRVSGDRVSFTACRFLGHQDTLLDDIGRHYYKSCYIQGATDFICGNAASLFENCHLRSVSEDVGTITAQRRESPSENTGFVFMGCKITGINSAVLGRPWGAFSRVVFGFTFMSDVILPEGWDNWQDPSKQSTVYYGQYKCYGKGANTSRRVSWSFTNMTAQDAAPFFTKSFIGAADWLRPVPNRFKRAFSSHP* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18904116 18906459 - CsaV3_2G028840.1 Csa02g02065 520122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02065 327 Pfam Pectinesterase 32 307 IPR000070 GO:0030599|GO:0042545
Csa02g02065 327 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 313 - -
Csa02g02065 327 Gene3D - 26 321 IPR012334 -
Csa02g02065 327 SUPERFAMILY Pectin lyase-like 26 316 IPR011050 -
Csa02g02065 327 PANTHER PECTINESTERASE 11-RELATED 11 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02065 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215800 634.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02065 Csa-Chr2:18904116 Csa07g01935 Csa-Chr7:19147648 3.18E-74 dispersed
Csa01g02872 Csa-Chr1:25242995 Csa02g02065 Csa-Chr2:18904116 3.47E-97 transposed
Csa01g03021 Csa-Chr1:26341208 Csa02g02065 Csa-Chr2:18904116 2.99E-78 transposed
Csa02g00510 Csa-Chr2:3597727 Csa02g02065 Csa-Chr2:18904116 2.29E-69 transposed
Csa02g00934 Csa-Chr2:8812145 Csa02g02065 Csa-Chr2:18904116 5.64E-67 transposed
Csa03g02455 Csa-Chr3:22768564 Csa02g02065 Csa-Chr2:18904116 4.35E-58 transposed
Csa03g03332 Csa-Chr3:30254124 Csa02g02065 Csa-Chr2:18904116 1.26E-80 transposed
Csa04g00534 Csa-Chr4:3525509 Csa02g02065 Csa-Chr2:18904116 6.74E-88 transposed
Csa04g00726 Csa-Chr4:4940430 Csa02g02065 Csa-Chr2:18904116 1.63E-79 transposed
Csa05g00422 Csa-Chr5:2799276 Csa02g02065 Csa-Chr2:18904116 1.14E-78 transposed
Csa07g00944 Csa-Chr7:8228368 Csa02g02065 Csa-Chr2:18904116 3.54E-82 transposed
Csa03g01521 Csa-Chr3:11292633 Csa02g02065 Csa-Chr2:18904116 2.26E-73 transposed
Csa02g01264 Csa-Chr2:12354798 Csa02g02065 Csa-Chr2:18904116 1.52E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51