Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02080 ATGGAATCTACTGATTTCCACTTTCTTCAAGATCAGTGTTCCTTGTCTGTTCTAATGTTGTACCTTACATCTGTTTGGCTTTTGTTGAGCTTGGTGGGAATGGCGACCCCTGTTGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAACATTACTATTCAATGTGGCAGACATTGTTCGAGATTGATACTAAATATGTACCTATCAAGCCTATTGGTCGAGGGGCATACGGTATTGTGTGTTCTTCTGTGAATAGGGAAACAAATGAGAAAGTTGCAATAAAGAGAATACATAATGCGTTTGAGAATCGTATCGATGCACTCCGGACTTTGCGGGAACTGAAGCTCCTTAGGCATCTTCGCCACGAAAACGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTCTATTTGGTTTATGAACTGATGGATACTGATCTGCATCAGATTATTAAATCTTCTCAAACTCTTACCAATGACCATTGCCAATATTTCCTCTTTCAGGTCAGCATATTCAATGGATGGTATCAGCAACAGGAAGTAATTGAATTTTTTGAAAGATCTGAGACTTTAATGGACACAATTTTCGAAGTTCAGAAACTTGTTGTGTAG 630 38.89 MESTDFHFLQDQCSLSVLMLYLTSVWLLLSLVGMATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQVSIFNGWYQQQEVIEFFERSETLMDTIFEVQKLVV* 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18979563 18981540 + CsaV3_2G028990.1 Csa02g02080 520137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02080 209 Pfam Protein kinase domain 66 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02080 209 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 44 175 - -
Csa02g02080 209 Gene3D Transferase(Phosphotransferase) domain 1 149 175 - -
Csa02g02080 209 Gene3D Phosphorylase Kinase; domain 1 52 148 - -
Csa02g02080 209 SMART serkin_6 65 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02080 209 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 44 175 - -
Csa02g02080 209 ProSiteProfiles Protein kinase domain profile. 65 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02080 209 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Csa02g02080 209 SUPERFAMILY Protein kinase-like (PK-like) 57 175 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02080 Csa-Chr2:18979563 Csa04g00548 Csa-Chr4:3646885 4.14E-89 dispersed
Csa02g02080 Csa-Chr2:18979563 Csa05g00251 Csa-Chr5:1523550 3.94E-56 transposed
Csa02g02080 Csa-Chr2:18979563 Csa06g00083 Csa-Chr6:532725 2.55E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77918 PF00069 Pkinase 2.50E-18 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02080 K20535 - csv:101213478 282.722