Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa02g02081 | ATGCAGTTGCTCCGAGGCCTAAAGTATCTGCATTCTGCAAACATTCTACATCGGGACTTGAAGCCGGGGAACCTTCTTGTCAATGCAAATTGTGATCTTAAGATATGTGATTTTGGTTTAGCACGTACAAGCAATGGGAAGAATCAATTTATGACTGAGTATGTCGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGTGAGAATTACGGGACGTCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCTGAGCTTCTCGGTAGGAAACCTATCTTCCCTGGTACAGAATGTTTGAATCAACTCAAATTGATAATTAACCTACTGGGAAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAATCCAAAGGCAAGGAGGTATATAAAATCCCTTCCATACTCTCCTGGAGCTCCTCTTTCCCGTCTTTATCCGAGCGCTCATCCTCTCGCAATTGATCTGCTACAAAAGATGCTTGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAGGCATTACAGCATCCTTATATGTCCCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTGCCAATCGATCTTGAGATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCCGAAGACCTGGAAGAACACGCAGAAATGACACGTTTCCACCCCGAACCTACTACAAGTAGTGCCGCAGTTAACTTCGTTCCATTGCCCCTCCCTGCCCTCGTCGCACTGGGGAAGAATGGTGGTCATCTCAATAATGATGAAGGAATGGACGAATACAAACTTAGAACGCTTTGA | 840 | 45.0 | MQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINLLGSQREEDLEFIDNPKARRYIKSLPYSPGAPLSRLYPSAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLEIDEELGEEMIREMMWKEMLHYHPEDLEEHAEMTRFHPEPTTSSAAVNFVPLPLPALVALGKNGGHLNNDEGMDEYKLRTL* | 280 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 18981944 | 18989908 | + | CsaV3_2G029000.1 | Csa02g02081 | 520138 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa02g02081 | 279 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 180 | - | - | |
| Csa02g02081 | 279 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 15 | 27 | IPR008271 | GO:0004672|GO:0006468 | |
| Csa02g02081 | 279 | ProSiteProfiles | Protein kinase domain profile. | 1 | 180 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa02g02081 | 279 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 187 | IPR011009 | - | |
| Csa02g02081 | 279 | SMART | serkin_6 | 1 | 180 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa02g02081 | 279 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 1 | 227 | - | - | |
| Csa02g02081 | 279 | Pfam | Protein kinase domain | 2 | 180 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa02g02081 | 279 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 1 | 227 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g02081 | Csa-Chr2:18981944 | Csa04g00548 | Csa-Chr4:3646885 | 7.69E-130 | dispersed | |
| Csa02g02081 | Csa-Chr2:18981944 | Csa06g00083 | Csa-Chr6:532725 | 1.25E-87 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77919 | PF00069 | Pkinase | 1.00E-46 | CL0016 | Csa | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa02g02081 | K20535 | - | csv:101213478 | 485.723 |