Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02088 ATGATCACCACTAAGCTTCTCTTGGCCTTTTCCATCTGCCGTTTGATAGCCACCGTCGGACTCAACATGGGTCCCGCGACAGAGCTTCCCCGTCTTGGTATCGACGGCCTTCTCACTGTCGACCCTTTGGATATCGAAACTGCTTCTATTGATTTTGGTCTTATGACCCGAGACCCGCCTCTAGCCGTTTTGCACCCTGCCTCTGCCGATGACGTAGCTAAATTGATCCGGACGGTGGCGAATGCGGCGGAGGAGGAGAATGGTGGGTTTACGGTGTCGGCGAGAGGGCATGGGCATTCGATAAACGGGCAGGCGCAGACGGGGAATGGGGTGGTGATTGAAATGAGTGGCGGCGGAAGACAGCACCGGCGCGTCGGCGGGAGAGGTGCTTCGCCGCCGCTACCGGTAGTGTCGGAGAAAGGGAGATTTGTTGATGTGTGGGGCGGAGAGCTGTGGATTGATGTACTGAAATGGACTTTGGAATATGGATTGGCGCCGAGATCGTGGACGGATTATTTGTATTTGTCAGTCGGCGGGACGCTGTCGAACGGCGGAATCAGCGGCCAAGCTTTTAACCACGGCCCTCAGATTAGCAATGTCCATGAACTTGACGTCGTCACAGGTAATGGAGAGATAGTGAAATGTTCAAATGAAGAAAACGCAGATTTATTCCACGGAGTTCTTGGTGGGTTAGGACAATTTGGAATCATCACACGAGCAAGAATTGTTCTCGAACCAGCCCCTCAAAGGGTTAGATGGATTAGAGTACTGTACTCAAATTTCGAAGCATTTACAAAGGATCAAGAATGGCTAATCTCACTGCATTCGAAAACAAACAGCAATGAAAAATTCGATTACGTGGAAGGATTTGTGATCGTTGATGAAGGTTTAATCAACAACTGGAGATCTTCCTTTTTCTCACCAGCTAATCCGGTCAAAATTTCTTCCTTTAATAAAAACAAATCTCATGGAGCTGTTTTATACTGCTTGGAGATCACCAAAAACTACCATGAATCCTCGTCTCACACTCTTGATCAGGAAGTGGAGGCGTTGATGAAGGAATTGAATTACATACCCGAGTCGGTTTTCACAACGGACCTAGGTTACGTGGACTTTCTGGACCGGGTTCACAAGGCCGAGTTAAAGCTCCGGTCCAAGGGGTTATGGGATGTCCCACATCCATGGCTAAACCTCTTCGTCCCAAAGTCGAGAATCGCCGATTTTGACCGAGGAGTTTTCAAGGGCATTTTGGGAAATAATACCAGTGGCCCCATCCTCATCTACCCTATGAACAAACACAAATGGGACCCGAGGACCTCCGCCGTGACTCCGGAGGATGATGTGTTCTACCTAGTGGCATTGCTACGGTCGGCATTGGACAATGGGGAGCCAACGCAGTCATTGGAGTATCTGAGCCATCAGAATCATCAGATCTTGGAATTCTGTTATGAAAATGGGATTGAAGTGAAACAGTACCTGCCTCATTATACAAAGGAGGAAGAATGGGCAGACCATTTTGGGGATAAGTGGCCGGAGTTTCAAGCGAGGAAGCTGAAGTTTGATCCCCACCATATTCTAGCCACTGGACAGAGGATATTCCCAGCCTTCAAGCCGGTAAACATGGCGGTATCCCGCTGA 1638 49.15 MITTKLLLAFSICRLIATVGLNMGPATELPRLGIDGLLTVDPLDIETASIDFGLMTRDPPLAVLHPASADDVAKLIRTVANAAEEENGGFTVSARGHGHSINGQAQTGNGVVIEMSGGGRQHRRVGGRGASPPLPVVSEKGRFVDVWGGELWIDVLKWTLEYGLAPRSWTDYLYLSVGGTLSNGGISGQAFNHGPQISNVHELDVVTGNGEIVKCSNEENADLFHGVLGGLGQFGIITRARIVLEPAPQRVRWIRVLYSNFEAFTKDQEWLISLHSKTNSNEKFDYVEGFVIVDEGLINNWRSSFFSPANPVKISSFNKNKSHGAVLYCLEITKNYHESSSHTLDQEVEALMKELNYIPESVFTTDLGYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIADFDRGVFKGILGNNTSGPILIYPMNKHKWDPRTSAVTPEDDVFYLVALLRSALDNGEPTQSLEYLSHQNHQILEFCYENGIEVKQYLPHYTKEEEWADHFGDKWPEFQARKLKFDPHHILATGQRIFPAFKPVNMAVSR* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19015092 19020819 - CsaV3_2G029070.1 Csa02g02088 520145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02088 545 ProSiteProfiles PCMH-type FAD-binding domain profile. 56 247 IPR016166 GO:0071949
Csa02g02088 545 PANTHER GULONOLACTONE OXIDASE 4 534 - -
Csa02g02088 545 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 248 533 IPR015345 GO:0009690|GO:0019139|GO:0050660
Csa02g02088 545 Gene3D - 115 249 IPR016169 -
Csa02g02088 545 Pfam FAD binding domain 60 216 IPR006094 GO:0050660
Csa02g02088 545 Gene3D - 250 492 IPR016170 -
Csa02g02088 545 SUPERFAMILY FAD-binding/transporter-associated domain-like 35 246 IPR036318 GO:0050660
Csa02g02088 545 SUPERFAMILY FAD-linked oxidases, C-terminal domain 248 533 IPR016164 GO:0003824|GO:0050660
Csa02g02088 545 Gene3D - 41 533 IPR016167 -
Csa02g02088 545 PANTHER CYTOKININ OXIDASE 5-RELATED 4 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02088 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - csv:101212272 1112.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02934 Csa-Chr1:25748459 Csa02g02088 Csa-Chr2:19015092 2.28E-172 dispersed
Csa02g02088 Csa-Chr2:19015092 Csa04g01749 Csa-Chr4:17087299 0 dispersed
Csa02g02088 Csa-Chr2:19015092 Csa02g00046 Csa-Chr2:381124 3.36E-178 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1010 . . . . . . . . Cmo05g00273 Cmo12g00392 . . . Car12g00418 . . Cpe07g00396 Bhi04g00207 . . . Hepe10g0607 . . Cla08g01458 Cam08g1944 Cec08g1518 Cco08g1657 Clacu08g1634 . Cre08g1420 . . Cone17ag1365 Cone20ag0116 . . . Cme03g01922 . . . . . . . . . . . Cma12g00441 Cma05g00269 Car05g00223 . Cpe11g00222 . . . . . . . . . . . . . . . Lsi08g01364 Csa02g02088 Chy03g01426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009284 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34