Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02090 ATGAGTTTTGATGATTCTCGAAAAATCAAGCCAATCATGGCTGGTCCTTTTGGGGGACCAGCTGGAAATAATTGGGATGATGGAGTTTATTCGACTATCAGGCAGTTGATAATTTGCCATGGAGCTGGTATCGACTCCATTAAGATTCAATATGATGTGAAGGGAAGTTCAATTTGGTCAGATAGACATGGAGGAAATGGTGGCACTAAAACAGACACGGTGAAGCTTGATTTTCCGGATGAGTACTTGACTATGATCCGTGGACACTATGGTAGCTTTGTGTCATTTGACAAAGTGTTTGTTCGATCCCTAACTTTTATGAGCAACAAAAAGAAGTATGGACCTTACGGGGTCGAACAAGGAACAATTTTCTCTTTTCCAACGACTGAGGGCAAGATTGTAGGGTTCCATGGCAGGAGTGGATTGTACCTGGATGCCATTGGAGTTTATCTAAAGCCTATGGCTATACAATCACCATCTAAAGCAATGATTCAATCACGGGACCATCTTGCTAGTAAGACTGAAAATGAAGGGTATTCAATTATACAAGGAAGTGTTGGTCAAAATTATGATATTGTTCTTGCTGTCAGGCAGAAGGATGAATTCAAAACACCTCTTCCAACTACTATCTCAAAACAAGTATCTAGTTCCTCAAGCTCAGAATCAAGTGATGATGAATCCACAATTAAGAGGCCTGTTAAGAAGGGACCGTCTAAAGTTGAAAATGTGGTACCATGTGGACCTTGGGGCGGCTCGGGCGGAACAGTATTTGATGATGGATGTTACTCTGGTATTAGACAAATTAATGTGTCGCGCAATGTTGGAATTGTATACATAAGAGTTCTATATGCTTGCGATGAAGAATCTATATGGGGAGCACGGGCAGGTGGAACGGGAGGATTCAAATATGACAAGGTTATCTTTGATTATCCATATGAAATCTTGACTCATGTAACTGGACACTATGGGCCTGTCATGTACATGGGACCTAATGTTATCAAGTCACTCACATTTCATACTACAAAAGCGAAGTACGGACCATTTGGAGAGGCACAAGGAACCCCCTTTAGTACCAATGTCAAGGAGGGGAAGATTGTTGGATTTCATGGGAGGAAAGGTTTGTTCCTAGATGCTCTTGGTGTGCACATAGTTGAAGGAAAGGTGACCCCGCTGTCTCGTCCTCCCTCCAGGGATATTATTCCTGCTGCTCCACCACTTCTTGAAAATAGTAATGCCCCTTGGACTATGAAACTAGCACCTTCAAAAGGAGCACTTGAAGAGATGGCTCGTGGTGTAGTAAAAGAACCAGCACCCTGTGGACCTGGACCATGGGGTGGAGATGGCGGTAAACCATGGGATGATGGAGTATTTTCTGGCATTAAACAGATATACTTGACACGGTCTCTTGAAGCTTTTTGTTCAATTCAAATTGAATACGATCGAAACAAACAATCAGTTTGGTCAGTTAGGCATGGAGGAAACAGTGGAACAACCATACATCGGGTAAAATTGGATTATCCACATGAAGTGTTAACATGTATATCAGGATATTACGGTTACATCGGTAAAGATGAGAGACAACAAGCTGTAAAGTCGCTTACATTTCACACAAGCAGGGGGAAGTTCGGTCCATTTGGGGAGGAGGTAGGGTCGTTTTTCACGTCAACAACGACAGAGGGCAAAGTAGTTGGCTTCCATGGGAGGAGCAGCTTGTATTTGGACGCCATCGGAGTTCACATGCAACACTGGCTAGGAAGCCAAAGGGCAACTAGGTCGTCCTTTTTCAAACTGTTCTGA 1797 43.07 MSFDDSRKIKPIMAGPFGGPAGNNWDDGVYSTIRQLIICHGAGIDSIKIQYDVKGSSIWSDRHGGNGGTKTDTVKLDFPDEYLTMIRGHYGSFVSFDKVFVRSLTFMSNKKKYGPYGVEQGTIFSFPTTEGKIVGFHGRSGLYLDAIGVYLKPMAIQSPSKAMIQSRDHLASKTENEGYSIIQGSVGQNYDIVLAVRQKDEFKTPLPTTISKQVSSSSSSESSDDESTIKRPVKKGPSKVENVVPCGPWGGSGGTVFDDGCYSGIRQINVSRNVGIVYIRVLYACDEESIWGARAGGTGGFKYDKVIFDYPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKAKYGPFGEAQGTPFSTNVKEGKIVGFHGRKGLFLDALGVHIVEGKVTPLSRPPSRDIIPAAPPLLENSNAPWTMKLAPSKGALEEMARGVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTRSLEAFCSIQIEYDRNKQSVWSVRHGGNSGTTIHRVKLDYPHEVLTCISGYYGYIGKDERQQAVKSLTFHTSRGKFGPFGEEVGSFFTSTTTEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRATRSSFFKLF* 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19030830 19033307 - CsaV3_2G029090.1 Csa02g02090 520147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02090 598 SUPERFAMILY Mannose-binding lectins 438 580 IPR036404 -
Csa02g02090 598 CDD Jacalin 254 383 IPR033734 GO:0030246
Csa02g02090 598 CDD Jacalin 22 152 IPR033734 GO:0030246
Csa02g02090 598 SUPERFAMILY Mannose-binding lectins 245 383 IPR036404 -
Csa02g02090 598 PANTHER JACALIN-RELATED LECTIN 3 32 523 - -
Csa02g02090 598 PANTHER JACALIN-RELATED LECTIN 3 529 582 - -
Csa02g02090 598 SMART Jacalin_2 449 582 IPR001229 -
Csa02g02090 598 SMART Jacalin_2 254 385 IPR001229 -
Csa02g02090 598 SMART Jacalin_2 22 153 IPR001229 -
Csa02g02090 598 CDD Jacalin 452 581 IPR033734 GO:0030246
Csa02g02090 598 PANTHER BNAA06G13880D PROTEIN 529 582 - -
Csa02g02090 598 PANTHER BNAA06G13880D PROTEIN 32 523 - -
Csa02g02090 598 MobiDBLite consensus disorder prediction 207 223 - -
Csa02g02090 598 ProSiteProfiles Jacalin-type lectin domain profile. 243 385 IPR001229 -
Csa02g02090 598 SUPERFAMILY Mannose-binding lectins 11 153 IPR036404 -
Csa02g02090 598 ProSiteProfiles Jacalin-type lectin domain profile. 438 582 IPR001229 -
Csa02g02090 598 MobiDBLite consensus disorder prediction 207 240 - -
Csa02g02090 598 ProSiteProfiles Jacalin-type lectin domain profile. 11 153 IPR001229 -
Csa02g02090 598 Pfam Jacalin-like lectin domain 449 581 IPR001229 -
Csa02g02090 598 Pfam Jacalin-like lectin domain 22 153 IPR001229 -
Csa02g02090 598 Pfam Jacalin-like lectin domain 254 383 IPR001229 -
Csa02g02090 598 Gene3D - 2 151 IPR036404 -
Csa02g02090 598 Gene3D - 233 384 IPR036404 -
Csa02g02090 598 Gene3D - 433 581 IPR036404 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02090 - - - csv:101214358 1195.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02090 Csa-Chr2:19030830 Csa03g04220 Csa-Chr3:36971572 7.39E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53