Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02091 ATGGAGAAACTGGCAATTCCTTGCCAAACGAACCCTCCAATTTCTGGCCCTGCTTCCGTTATCAAACCCAGACCCCTTAAATTCTCTTCAAAACCAATTAAAACTTCTATATTTTTCACCTACAAACTTACTTCTAAGTTCAATGATGACCATTTGAGTTACCTTTGCAGCAATGGGCTACTCCGTGAAGCCATAACAGCCATCGATTCGATTTCTAAACGTGGGTCTAAGTTAAGCACCAACACGTATATCAATTTGCTTCAAACTTGCATAGATGTGGGTTCCATTGAACTGGGTCGTGAGCTTCATGTTCGTATGGGTTTAGTCCATCGGGTAAACCCATTTGTTGAGACGAAGCTAGTAAGTATGTATGCGAAATGTGGGTGTCTTAAGGATGCACGCAAGGTGTTTGATGGAATGCAGGAGAGAAATTTGTATACTTGGTCGGCAATGATAGGGGCATATTCGAGAGAGCAGAGATGGAAAGAAGTAGTTGAACTTTTCTTTTTGATGATGGGAGATGGGGTGCTGCCTGATGCCTTTCTTTTCCCAAAAATACTACAGGCTTGTGGGAATTGCGAGGATCTTGAAACTGTGAAGTTGATACATTCTCTCGTTATTCGATGTGGGTTGAGTTGTTATATGCGTCTGAGCAATTCTATTTTGACGGCATTTGTCAAATGTGGGAAGTTGAGTCTAGCTAGGAAGTTCTTTGGGAACATGGACGAAAGAGATGGGGTCTCTTGGAATGTTATGATCGCTGGTTATTGCCAGAAGGGAAATGGTGATGAAGCTAGGAGATTGCTTGACACGATGAGCAATCAAGGATTCAAACCGGGTTTGGTTACTTATAACATAATGATTGCTAGTTATAGCCAGTTGGGGGATTGTGATCTTGTTATAGACTTGAAGAAGAAGATGGAGAGTGTGGGTTTAGCGCCTGATGTCTATACTTGGACCTCAATGATTTCAGGTTTTTCTCAAAGCAGCAGGATTAGTCAGGCATTGGATTTCTTCAAGAAGATGATTCTTGCAGGGGTTGAACCAAATACTATAACTATTGCAAGTGCAACCTCAGCCTGTGCTTCCTTAAAATCACTGCAAAATGGACTAGAAATACATTGTTTTGCAATTAAAATGGGAATTGCGCGTGAAACATTGGTTGGGAATTCACTTATTGATATGTATTCTAAATGTGGAAAATTGGAAGCTGCTCGCCATGTATTTGACACGATCTTAGAAAAAGATGTTTATACATGGAACTCGATGATTGGAGGATATTGTCAGGCTGGATATGGTGGAAAAGCATACGAACTTTTTATGAGATTAAGGGAATCAACTGTCATGCCTAATGTTGTTACATGGAATGCGATGATATCAGGATGCATACAGAATGGAGATGAGGATCAAGCTATGGACCTCTTTCAAATAATGGAAAAAGATGGGGGGGTTAAGCGGAATACAGCATCCTGGAATTCTCTGATTGCTGGGTACCATCAGCTTGGTGAAAAGAACAAAGCTCTAGCAATATTTCGACAAATGCAGTCTCTTAATTTTAGTCCTAATTCAGTGACCATCTTGAGCATTTTACCAGCTTGTGCAAATGTAATGGCAGAGAAAAAGATAAAAGAAATCCATGGTTGTGTGTTGCGCAGAAACCTGGAATCTGAGCTAGCTGTTGCAAACTCACTTGTAGACACTTACGCCAAGTCAGGGAACATTAAATATTCAAGAACTGTCTTTAATGGCATGTCATCCAAAGATATTATCACCTGGAATTCAATTATTGCAGGATATATTTTACATGGTTGTTCAGATTCTGCATTTCAATTGTTTGATCAGATGAGAAATCTCGGAATTAGGCCAAACCGAGGTACTTTGGCTAGTATTATTCATGCCTATGGCATTGCCGGAATGGTAGACAAGGGAAGACATGTTTTTTCTAGCATCACTGAAGAACATCAAATTCTACCAACTTTAGATCATTATTTGGCTATGGTAGATCTCTATGGACGTTCTGGGAGGCTTGCAGATGCAATAGAGTTCATCGAAGATATGCCTATAGAACCCGATGTCTCTATCTGGACCAGCTTACTTACGGCCTGCAGATTTCATGGAAACTTAAACTTGGCAGTTCTAGCAGCCAAGCGCCTCCACGAATTGGAGCCTGATAATCATGTGATATACCGTTTATTAGTGCAGGCATATGCTTTATATGGGAAATTTGAACAAACCCTAAAAGTGAGAAAGCTTGGAAAAGAGAGTGCGATGAAGAAATGTACAGCACAGTGCTGGGTTGAAGTCAGGAATAAAGTCCATTTATTTGTCACAGGCGACCAGTCTAAACTTGACGTTCTAAATACTTGGATAAAGAGCATTGAAGGGAAAGTAAAGAAATTTAATAATCACCATCAGCTCTCTATTGAAGAAGAAGAGAAAGAAGAAAAAATTGGTGGGTTCCACTGTGAAAAATTTGCATTTGCTTTTGGCCTTATTGGCTCATCTCACACACGTAAAAGTATAAAGATTGTGAAAAACTTAAGAATGTGCGTGGACTGTCATCAGATGGCCAAGTATATCTCAGCGGCTTATGAATGTGAAATATATTTAAGCGACTCGAAATGCTTGCACCATTTCAAAAACGGTCACTGTTCTTGTGGGGATTATTGGTAG 2673 40.07 MEKLAIPCQTNPPISGPASVIKPRPLKFSSKPIKTSIFFTYKLTSKFNDDHLSYLCSNGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVEVRNKVHLFVTGDQSKLDVLNTWIKSIEGKVKKFNNHHQLSIEEEEKEEKIGGFHCEKFAFAFGLIGSSHTRKSIKIVKNLRMCVDCHQMAKYISAAYECEIYLSDSKCLHHFKNGHCSCGDYW* 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19034494 19037166 - CsaV3_2G029100.1 Csa02g02091 520148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02091 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 485 522 - -
Csa02g02091 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 381 - -
Csa02g02091 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 384 451 - -
Csa02g02091 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 521 877 - -
Csa02g02091 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Csa02g02091 890 Pfam PPR repeat 120 144 IPR002885 -
Csa02g02091 890 Pfam PPR repeat 146 176 IPR002885 -
Csa02g02091 890 Pfam PPR repeat 219 244 IPR002885 -
Csa02g02091 890 Pfam PPR repeat 663 686 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 119 145 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 418 451 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 490 522 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 453 484 IPR002885 -
Csa02g02091 890 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Csa02g02091 890 Gene3D Tetratricopeptide repeat domain 48 208 IPR011990 GO:0005515
Csa02g02091 890 Gene3D Tetratricopeptide repeat domain 209 365 IPR011990 GO:0005515
Csa02g02091 890 Gene3D Tetratricopeptide repeat domain 560 823 IPR011990 GO:0005515
Csa02g02091 890 SUPERFAMILY TPR-like 491 744 IPR011990 GO:0005515
Csa02g02091 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Csa02g02091 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Csa02g02091 890 PANTHER BNAA06G13890D PROTEIN 384 451 - -
Csa02g02091 890 PANTHER BNAA06G13890D PROTEIN 485 522 - -
Csa02g02091 890 PANTHER BNAA06G13890D PROTEIN 49 381 - -
Csa02g02091 890 PANTHER BNAA06G13890D PROTEIN 521 877 - -
Csa02g02091 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Csa02g02091 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Csa02g02091 890 Gene3D Tetratricopeptide repeat domain 366 463 IPR011990 GO:0005515
Csa02g02091 890 Gene3D Tetratricopeptide repeat domain 476 547 IPR011990 GO:0005515
Csa02g02091 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Csa02g02091 890 Pfam DYW family of nucleic acid deaminases 807 890 IPR032867 GO:0008270
Csa02g02091 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Csa02g02091 890 SUPERFAMILY HCP-like 256 519 - -
Csa02g02091 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Csa02g02091 890 Pfam E motif 705 767 IPR046848 -
Csa02g02091 890 Pfam PPR repeat family 487 534 IPR002885 -
Csa02g02091 890 Pfam PPR repeat family 415 454 IPR002885 -
Csa02g02091 890 Pfam PPR repeat family 314 354 IPR002885 -
Csa02g02091 890 Pfam PPR repeat family 246 290 IPR002885 -
Csa02g02091 890 Pfam PPR repeat family 587 634 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02091 - - - csv:101214358 1780.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02091 Csa-Chr2:19034494 Csa01g00323 Csa-Chr1:2003209 2.53E-30 dispersed
Csa06g01466 Csa-Chr6:12458221 Csa02g02091 Csa-Chr2:19034494 6.55E-07 dispersed
Csa06g02182 Csa-Chr6:19666904 Csa02g02091 Csa-Chr2:19034494 5.18E-99 dispersed
Csa07g00797 Csa-Chr7:5600562 Csa02g02091 Csa-Chr2:19034494 2.53E-10 dispersed
Csa02g02091 Csa-Chr2:19034494 Csa03g01691 Csa-Chr3:12669403 1.00E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1013 . . . . . . . . Cmo05g00276 . . . . . . . . Bhi04g00208 . . . . . . . . . . . . . . . . Cone20ag0115 . . . . . . . . . . . . . . . . Cma05g00271 Car05g00224 . Cpe11g00224 . . . . . . . . . . . . . . . . Csa02g02091 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53