Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02097 ATGTTGAAATCTTGCTCATCCAACAACAAGAACAACAAAAAGGCATCCTCAAGAAAGGGTTGTATGAGAGGAAAAGGAGGCCCTGAAAATGCTTTATGTACTTATAAAGGTGTTCGTCAAAGAACTTGGGGCAAATGGGTTGCTGAAATTCGAGAACCAAATCGTGGTGCTCGTCTTTGGCTTGGTACTTTTGATACTTCCCATGATGCTGCTTTAGCTTATGACAATGCTGCTCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCTAATTTCTTCTTCTATTTCTGTTTCTGTGTCTTCTTCTTCTTCTACTACTACTTCTGATAATAATAATAACAATAGTGTTGTTGCTACTGCTAATACTTATAATAATGATGTCAATCCTACGGTGGAAGATGTTGCTTCTTCTTCCTCTCTTTCTAATAACAAGAGATTTAGGGAGGATGAAGATCAGGAACAAATTGGAGGGCTTTGGAGAGCTATGAGTATTAGTTTAGATGATTCCATTTGGGTTGAAGCAGCCATGTCTTTGGATTTTCCACTTCTTATGGAACAACAAACCTTCTTTTCTCCTAATTTGGTTGATACTAATCCAAATGCTGGATTGGATTCTTCACTCCAATGGTATTAA 639 38.03 MLKSCSSNNKNNKKASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPLISSSISVSVSSSSSTTTSDNNNNNSVVATANTYNNDVNPTVEDVASSSSLSNNKRFREDEDQEQIGGLWRAMSISLDDSIWVEAAMSLDFPLLMEQQTFFSPNLVDTNPNAGLDSSLQWY* 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19060771 19061409 + CsaV3_2G029160.1 Csa02g02097 520154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02097 212 MobiDBLite consensus disorder prediction 125 144 - -
Csa02g02097 212 MobiDBLite consensus disorder prediction 1 15 - -
Csa02g02097 212 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Csa02g02097 212 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Csa02g02097 212 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Csa02g02097 212 MobiDBLite consensus disorder prediction 125 154 - -
Csa02g02097 212 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Csa02g02097 212 MobiDBLite consensus disorder prediction 1 23 - -
Csa02g02097 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 9 195 - -
Csa02g02097 212 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Csa02g02097 212 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Csa02g02097 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 195 - -
Csa02g02097 212 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Csa02g02097 212 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02097 Csa-Chr2:19060771 Csa04g01662 Csa-Chr4:15924998 2.06E-34 dispersed
Csa03g03619 Csa-Chr3:32245587 Csa02g02097 Csa-Chr2:19060771 2.50E-32 transposed
Csa06g00191 Csa-Chr6:1312263 Csa02g02097 Csa-Chr2:19060771 3.58E-28 transposed
Csa02g02097 Csa-Chr2:19060771 Csa03g04249 Csa-Chr3:37209320 1.70E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31003 PF00847 AP2 2.60E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02097 - - csv:101213875 372.089