Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02098 ATGGCGGACTCGGGCTCTGCCTCCGACAAGAGAATGTCGTGCTCTATCCCTGAGAGGTTCCAACTCCATGCCGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCATGTCGTCTCTAGAGCTGCCCTCAACATGGGCATTAGTAAACTCGTCTTCCCTGTTTACCGAAATGTCATCGCTTTGCTCCTCCTCCTTCCCTTTGCATATTTCATCGAAAAGAAGGATAGACCTGCTCTCACTCTCAACTTTGTCCTTCAGTTCTTCCTGCTGGCTCTCGTTGGAATTACAGCCAATCAAGGGTTTTACTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTTGTATTCAAAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCACTTCTCAGAATTGAGCAAGTACGACTGAACCGGAAAGATGGGATAGCAAAGGTGATGGGTACAATATGTTGCGTGGCCGGAGCGACGGTGATCACATTATACAAAGGGCCCACCATCTACAGCCCCTCAACAACGACGGTGACGTTGCAGGGTATGGCAGAGACGACGGCGGCAATGACGCTGCAAGGGCCGGGAATGTTCCCGTCGCTAGGCGACGCAAAGGGGAAAAGCTGGACGTTAGGGTGCGTGTACTTGATCGGCCACTGTTTGTCGTGGTCGGCGTGGCTAGTTCTTCAAGCACCGGTGCTGAAAAAGTATCCGGCTCGCCTCTCCGTCACCTCCTTCACTTGCTTCTTTGGCCTCATCCAATTCCTCATCATCGCCGTCGCCTTCGAGCGCGACGCTCAGGCTTGGCTCTTTCACTCCGGCGCTGAAGCCTTTAGCATTGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCATTTGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCTGTCTTCGTTGCTGTCTACCAACCTGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTACTTGGGAGGGATCATAGGGGCGGTGCTTATTATAACGGGATTGTACCTTGTGCTGTGGGGAAAGAGCGAAGAAAAGAAAATCCTATTGGAAAGATCAATGATCCAGACCGCACCGGACCATGGTAGCAGCAGAATAAGTGGCCAGATCAAACCGTCCATTACCCAGCCACTACTCCATCCTACGGCGGAAAATGTTTGA 1191 51.81 MADSGSASDKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASCIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPSTTTVTLQGMAETTAAMTLQGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIAVAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIITGLYLVLWGKSEEKKILLERSMIQTAPDHGSSRISGQIKPSITQPLLHPTAENV* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19067121 19071171 - CsaV3_2G029170.1 Csa02g02098 520155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02098 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 353 - -
Csa02g02098 396 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020|GO:0016021
Csa02g02098 396 Pfam EamA-like transporter family 211 349 IPR000620 GO:0016020|GO:0016021
Csa02g02098 396 PANTHER WAT1-RELATED PROTEIN 14 371 IPR030184 GO:0016021|GO:0022857
Csa02g02098 396 PANTHER WAT1-RELATED PROTEIN 14 371 - -
Csa02g02098 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02098 Csa03g04250 CCT
Csa02g02098 Csa03g04250 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02098 Csa-Chr2:19067121 Csa03g03689 Csa-Chr3:32827816 1.13E-80 dispersed
Csa05g02915 Csa-Chr5:29627127 Csa02g02098 Csa-Chr2:19067121 1.00E-50 dispersed
Csa01g00409 Csa-Chr1:2564011 Csa02g02098 Csa-Chr2:19067121 1.31E-141 transposed
Csa01g02638 Csa-Chr1:23362280 Csa02g02098 Csa-Chr2:19067121 1.69E-74 transposed
Csa02g00519 Csa-Chr2:3652692 Csa02g02098 Csa-Chr2:19067121 3.05E-65 transposed
Csa04g01773 Csa-Chr4:17392489 Csa02g02098 Csa-Chr2:19067121 6.34E-75 transposed
Csa05g00146 Csa-Chr5:801108 Csa02g02098 Csa-Chr2:19067121 1.47E-71 transposed
Csa02g02098 Csa-Chr2:19067121 Csa03g04250 Csa-Chr3:37232371 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02098 - - csv:101210562 782.711