Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02102 ATGGATCTGCTGCGATCGGAGCCGATGCAATTGGTGCAGCTGATCATTCCTAATGAATCGGCACGACGGACGATTTCCTACCTTGGTGACCTCGGTCTATTTCAATTCAACGATCTCAATGCATCTAAAAGCCCATTCCAACGGACGTATGCTGCTCAGATTAAAAGATGTGGGGAAATGGCTCGGAAGCTACGATTTTTCAGGGAGCAAATGACAAGGGCTGGTTTATCGCCATCATCATATTCTTTAGGGACTCATGACTTTGATCTGGATAATTTGGAGGTTAAACTTGGAGAACTTGAAGTAGAGTTGTTAGAGATAAAGGACAACAACGAAAAGTTACAACGCAATTATAGTGAGCTATTGGAATACAAGCTAGTGCTCCAGAAGGTTGGTGAGTTTTTTCATCTAGCTCAAAGGACAGCTGCAGCTCATCAAAGAGAACTGGAAGTGCAGCAAAACGGGGAAGGATCTATTGACACCCCCTTACTATTGGAACAAGAAATGACAACCGATCCAACGAAACAAGTTAAACTAGGATATATCAGTGGTCTAGTTCCGAGGGAAAAGTCAATGGCTTTTGAAAGGATTTTGTTTCGTTCAACTAGGGGCAATGTGTATCTGAGACAAGCTGTGATTGATGGTTCCGTTACTGATCCTGTATCTGGAGATAAGGTTGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAAAGAGCAAAGGAAAAAATTCGGAAAATATGCGAAGCTTTTGGTGCAAATCGTTACCCATTCACTGATGACTTGGGCAAACAATTTCAGATGATCACAGAGGTGTCTAGAAAGCTCTCCGAATTGAAGATTACCATTGATATGGGGCAACTGCACCGAAGTCAACTCTTGCAGACGATTGGCCATCAATATGAGCTGTGGAATCTTCTGGTAAAGAAGGAAAAATCTGTTTACCACACTTTGAATATGCTCAGTGTTGATGTTACAAAGAAATGCCTTGTAGGTGAAGGATGGTGCCCTGTTTTTGCAACAATTCAGATTCAAAGTGTGATGCAGAAGGCAACCCACGACAGCAAATCACAAATCGAGGCTATCTTTCATGTTTTGGATACAAAGGAAGCGCCACCAACATATTTCTGCACAAACAAATTTACTTCTTCGTTCCAAGAAATCGTGGATGCATATGGGGTTGCTAAGTATCAGGAAGCAAATCCTGGAGTCTACACTATTGTCACCTTCCCTTTCCTATTTGCTGTAATGTTTGGTGATTGGGGCCATGGAATATGCCTGTTGCTGGCAACATTATATTTTATAATAAGGGAGAAGAAATTCTCCGGCCAGAAACTTGGAGATATCGTTGAAATGACTTTTGGGGGTCGTTATGTTATCATGATGATGGCACTTTTTTCGATCTACACAGGACTGATTTACAATGAATTCTTTTCTGTCCCATTTGAACTTTTTGGGCCTTCTGCATACGGTTGTCGTGATACTTCATGCAGGGATGCTACTTCCATTGGTTTAATAAAGGTTCGTGATACATATCCATTTGGTGTGGATCCCAAGTGGCATGGCACGCGAAGTGAGTTACCTTTTCTCAACTCTTTGAAGATGAAGATGTCTATCCTACTGGGAGTAGCTCAAATGAATCTAGGAATTATACTGAGCTACTTCAATGCAAAATTCTTTGGAGAAAGCATTAACATCTGGTACCAATTTGTTCCCCAGATGATATTCTTGAACAGCTTATTTGGTTACCTCTCACTTCTCATCATTGTAAAGTGGTACTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATATATGTTCTTGAGTCCTACTGATGATCTAGGTGAAAATCAGCTTTTCCCAGGACAGAAGTTCCTTCAGCTTCTGTTACTTCTGTCTGCCCTCACTGCCGTGCCATGGATGTTATTTCCCAAGCCTTTTCTTTTGAAGAAACAAAATGAAGAAAGGCACCAAGGACAATCCTACTCCGTACTTCACTGTACAGATGACAATCACGAAATAGAACGACACCACGGTTCCCATGGCCATGAAGAGTTTGATTTCAGTGAGGTTTTTGTACACCAACTTATACATACCATAGAGTTTGTCCTTGGTGCAGTCTCGAACACAGCATCCTATCTTCGTCTATGGGCCCTCAGTCTAGCGCATTCAGAGTTGTCGAGTGTATTTTACGACAAGGTTCTACTCTTAGCTTGGGGGTTCGATAGTTTGATCATCCGAATAGTAGGAATGGCTGTTTTCATTTTTGCAACTGTGGGAGTTCTACTAATTATGGAAACTCTAAGCGCATTCCTACACGCCTTGAGGCTCCACTGGGTGGAGTTTCAGAACAAATTCTACGCTGGAGATGGATTCAAATTTTCCCCTTTCTCCTTTTCGTTGCTTCGAGAGGAGGATGAGTGA 2427 41.74 MDLLRSEPMQLVQLIIPNESARRTISYLGDLGLFQFNDLNASKSPFQRTYAAQIKRCGEMARKLRFFREQMTRAGLSPSSYSLGTHDFDLDNLEVKLGELEVELLEIKDNNEKLQRNYSELLEYKLVLQKVGEFFHLAQRTAAAHQRELEVQQNGEGSIDTPLLLEQEMTTDPTKQVKLGYISGLVPREKSMAFERILFRSTRGNVYLRQAVIDGSVTDPVSGDKVEKNVFVIFYSGERAKEKIRKICEAFGANRYPFTDDLGKQFQMITEVSRKLSELKITIDMGQLHRSQLLQTIGHQYELWNLLVKKEKSVYHTLNMLSVDVTKKCLVGEGWCPVFATIQIQSVMQKATHDSKSQIEAIFHVLDTKEAPPTYFCTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIIREKKFSGQKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDTSCRDATSIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNAKFFGESINIWYQFVPQMIFLNSLFGYLSLLIIVKWYSGSQADLYHVMIYMFLSPTDDLGENQLFPGQKFLQLLLLLSALTAVPWMLFPKPFLLKKQNEERHQGQSYSVLHCTDDNHEIERHHGSHGHEEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFDSLIIRIVGMAVFIFATVGVLLIMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPFSFSLLREEDE* 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19116549 19125666 - CsaV3_2G029210.1 Csa02g02102 520159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02102 808 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1 808 - -
Csa02g02102 808 PANTHER VACUOLAR PROTON ATPASES 1 808 IPR002490 GO:0033179|GO:0046961|GO:1902600
Csa02g02102 808 PIRSF ATP6V0A1 1 808 IPR026028 GO:0000220|GO:0046961
Csa02g02102 808 Pfam V-type ATPase 116kDa subunit family 27 800 IPR002490 GO:0033179|GO:0046961|GO:1902600
Csa02g02102 808 Coils Coil 90 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02102 Csa-Chr2:19116549 Csa06g01652 Csa-Chr6:14511145 0 dispersed
Csa02g02102 Csa-Chr2:19116549 Csa07g00020 Csa-Chr7:346023 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02102 K02154 - csv:101209817 1580.46