Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02103 ATGATCAACGACCCTTCCGATGAGCCTTCTAGATCAGCTTTTACCCTCATGCGCCCAGCTGCTGCTGCTTTTGCCGCCGCAGCCGCTTCTGCCGCTACTGCTGGCGGCATGAATTGTCAAGATTGCGGCAACCAAGCTAAGAAGGATTGTGCTTATTTGCGGTGTAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGTCAGACTCACGTGAAAAGCACGTGGGTTCCCGCTGCTAAACGCCGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTTAATATCGGTGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAACTCCGTTACACCGCAGCTGGTGAAAGCTCTTCCGGCCACGGCGGAGACGGATCAACACACCCACTTAACCTAATTGCCGGTCCCACTTCCACCTCTACTTCCGCCGCAACTAGTACCAACCCCGCTGCCGCCTCCGCCTCTACCGCGCCGTTGCTTGATCCTTCTATATATCCAGCTCCTCTCAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 636 53.14 MINDPSDEPSRSAFTLMRPAAAAFAAAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPELRYTAAGESSSGHGGDGSTHPLNLIAGPTSTSTSAATSTNPAAASASTAPLLDPSIYPAPLNAFMAGTQFFPPSRS* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19139683 19140820 - CsaV3_2G029220.1 Csa02g02103 520160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02103 211 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 82 208 IPR007818 GO:0003700|GO:0006355
Csa02g02103 211 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 8 81 IPR007818 GO:0003700|GO:0006355
Csa02g02103 211 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 86 134 IPR006511 -
Csa02g02103 211 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 38 80 IPR006510 -
Csa02g02103 211 MobiDBLite consensus disorder prediction 140 182 - -
Csa02g02103 211 PANTHER PROTEIN SHI RELATED SEQUENCE 7 82 208 - -
Csa02g02103 211 MobiDBLite consensus disorder prediction 146 181 - -
Csa02g02103 211 Pfam Domain of unknown function (DUF702) 86 135 - -
Csa02g02103 211 Pfam Domain of unknown function (DUF702) 36 82 - -
Csa02g02103 211 PANTHER PROTEIN SHI RELATED SEQUENCE 7 8 81 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02103 Csa03g04251 CCT
Csa02g02103 Csa03g04251 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02103 Csa-Chr2:19139683 Csa07g00507 Csa-Chr7:3658819 1.66E-65 dispersed
Csa02g02103 Csa-Chr2:19139683 Csa03g04251 Csa-Chr3:37243313 3.02E-54 wgd
Csa02g02103 Csa-Chr2:19139683 Csa06g03294 Csa-Chr6:27622500 2.66E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31004 PF05142 DUF702 3.50E-24 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02103 - - cmos:111454480 299.671