Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02104 ATGAAGATTCAGTGTGATGTTTGTGAAAAAGGAGATGCGGTGGTGTTCTGCACGGCGGATGAGGCGGCGCTCTGTAATCTTTGTGATCACCGTGTCCACCATGCTAATAAGCTTGCTTCGAAGCATCGACGGTTTTCTCTGCTACGTCCTGATGCAGGGGAGGCTCCTGTTTGCGATGTGTGTAAGGAGCGGCGAGGGTTTTTGTTTTGTCAACAAGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTAAGAAGCACGATAGGTTTCTTTTAACTGGGATTAAGCTTTCCGCCAGTGCTGCTCTGTACGCGCCATCTCCATCCGGCGAGAAACCAATTGGGAGTGGTGGTTGTGTTGTTTCTGCATCTAAGTCAAAGGGATCTGTCAAGAAAGTGGCTGCGGTTTCCAAGGCCCCAACGATATGCACTCCAAATGTTTGTGTTAATGCCCCAACGAACATAACTCCAGCAGCAGTAGTGAACAAGGGAGGTGGAGGTCAGATTGCGACCGGCGGAGGTGGATCGGCGAGTAGCATATCGGAGTATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCCTCTGTCTCTCCTCCTTTTGTGGAGTTTGATGATGGGATAGGATTTCCATTTGTGGAAGGTGATTTGAATGGTTGTTTTTCATCATCGGAACGTATAGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCCGTATAATTCAGGATTAATGATGAATAATGGATTGAAGGACACAAAGGATTTGGGAGTAAATTCATCAAAAGTCAATAGATCAGTGTGGACAGATGATGGTTTCACTGTGCCACAGATCACAAGTACAGTCCCATCTCCAGGCTTTAAGAGATCCAGACCTTTTTGGTAA 921 47.34 MKIQCDVCEKGDAVVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPDAGEAPVCDVCKERRGFLFCQQDRAILCRECDDPIHSANELTKKHDRFLLTGIKLSASAALYAPSPSGEKPIGSGGCVVSASKSKGSVKKVAAVSKAPTICTPNVCVNAPTNITPAAVVNKGGGGQIATGGGGSASSISEYLMETLPGWHFEDFLDSSVSPPFVEFDDGIGFPFVEGDLNGCFSSSERIELWVPQGPPPAPYNSGLMMNNGLKDTKDLGVNSSKVNRSVWTDDGFTVPQITSTVPSPGFKRSRPFW* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19152113 19154409 - CsaV3_2G029230.1 Csa02g02104 520161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02104 306 SMART bboxneu5 53 100 IPR000315 GO:0008270
Csa02g02104 306 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa02g02104 306 CDD Bbox1_BBX-like 57 100 - -
Csa02g02104 306 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa02g02104 306 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Csa02g02104 306 CDD Bbox1_BBX-like 5 47 - -
Csa02g02104 306 Gene3D Classic Zinc Finger 1 95 - -
Csa02g02104 306 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 304 - -
Csa02g02104 306 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Csa02g02104 306 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02104 - - - csv:101209573 576.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02104 Csa-Chr2:19152113 Csa04g00581 Csa-Chr4:3819528 1.76E-23 dispersed
Csa04g00821 Csa-Chr4:5753161 Csa02g02104 Csa-Chr2:19152113 1.87E-36 transposed
Csa06g00679 Csa-Chr6:5555910 Csa02g02104 Csa-Chr2:19152113 1.03E-37 transposed
Csa07g00509 Csa-Chr7:3665194 Csa02g02104 Csa-Chr2:19152113 1.92E-26 transposed
Csa02g01300 Csa-Chr2:12644521 Csa02g02104 Csa-Chr2:19152113 1.05E-49 wgd
Csa02g02104 Csa-Chr2:19152113 Csa06g03304 Csa-Chr6:27677901 5.35E-22 wgd
Csa02g02104 Csa-Chr2:19152113 Csa07g00027 Csa-Chr7:395757 1.93E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02445 . 6 338 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 1.4e-42 170.6
Csa02g02445 . 1 338 C2C2-CO-like Transcription Factor Family AT5G24930 61.0 8.2e-83 304.3
Csa01g02115 CCT 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.2e-57 220.7
Csa01g02115 CCT 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.2 4.3e-68 255.4
Csa02g02445 . 2 338 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.0e-53 206.1
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-90 328.9
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 3.5e-89 325.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa07g00027 CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 53.7 3.5e-48 189.1
Csa02g01300 CCT,ECH 1 173 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 6.2e-45 178.3
Csa04g00821 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 1.4e-78 290.0
Csa04g00581 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 60.5 2.6e-55 211.8
Csa06g03304 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Csa04g00581 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.0e-57 218.4
Csa06g03304 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Csa07g00027 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 54.8 3.8e-52 201.8
Csa02g02104 . 1 220 C2C2-CO-like Transcription Factor Family AT4G39070 50.7 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31005 PF00643 zf-B_box 5.50E-06 No_clan Csa TR