Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02104 ATGAAGATTCAGTGTGATGTTTGTGAAAAAGGAGATGCGGTGGTGTTCTGCACGGCGGATGAGGCGGCGCTCTGTAATCTTTGTGATCACCGTGTCCACCATGCTAATAAGCTTGCTTCGAAGCATCGACGGTTTTCTCTGCTACGTCCTGATGCAGGGGAGGCTCCTGTTTGCGATGTGTGTAAGGAGCGGCGAGGGTTTTTGTTTTGTCAACAAGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTAAGAAGCACGATAGGTTTCTTTTAACTGGGATTAAGCTTTCCGCCAGTGCTGCTCTGTACGCGCCATCTCCATCCGGCGAGAAACCAATTGGGAGTGGTGGTTGTGTTGTTTCTGCATCTAAGTCAAAGGGATCTGTCAAGAAAGTGGCTGCGGTTTCCAAGGCCCCAACGATATGCACTCCAAATGTTTGTGTTAATGCCCCAACGAACATAACTCCAGCAGCAGTAGTGAACAAGGGAGGTGGAGGTCAGATTGCGACCGGCGGAGGTGGATCGGCGAGTAGCATATCGGAGTATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCCTCTGTCTCTCCTCCTTTTGTGGAGTTTGATGATGGGATAGGATTTCCATTTGTGGAAGGTGATTTGAATGGTTGTTTTTCATCATCGGAACGTATAGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCCGTATAATTCAGGATTAATGATGAATAATGGATTGAAGGACACAAAGGATTTGGGAGTAAATTCATCAAAAGTCAATAGATCAGTGTGGACAGATGATGGTTTCACTGTGCCACAGATCACAAGTACAGTCCCATCTCCAGGCTTTAAGAGATCCAGACCTTTTTGGTAA 921 47.34 MKIQCDVCEKGDAVVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPDAGEAPVCDVCKERRGFLFCQQDRAILCRECDDPIHSANELTKKHDRFLLTGIKLSASAALYAPSPSGEKPIGSGGCVVSASKSKGSVKKVAAVSKAPTICTPNVCVNAPTNITPAAVVNKGGGGQIATGGGGSASSISEYLMETLPGWHFEDFLDSSVSPPFVEFDDGIGFPFVEGDLNGCFSSSERIELWVPQGPPPAPYNSGLMMNNGLKDTKDLGVNSSKVNRSVWTDDGFTVPQITSTVPSPGFKRSRPFW* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19152113 19154409 - CsaV3_2G029230.1 Csa02g02104 520161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02104 306 SMART bboxneu5 53 100 IPR000315 GO:0008270
Csa02g02104 306 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa02g02104 306 CDD Bbox1_BBX-like 57 100 - -
Csa02g02104 306 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa02g02104 306 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Csa02g02104 306 CDD Bbox1_BBX-like 5 47 - -
Csa02g02104 306 Gene3D Classic Zinc Finger 1 95 - -
Csa02g02104 306 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 304 - -
Csa02g02104 306 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Csa02g02104 306 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02104 Csa-Chr2:19152113 Csa04g00581 Csa-Chr4:3819528 1.76E-23 dispersed
Csa04g00821 Csa-Chr4:5753161 Csa02g02104 Csa-Chr2:19152113 1.87E-36 transposed
Csa06g00679 Csa-Chr6:5555910 Csa02g02104 Csa-Chr2:19152113 1.03E-37 transposed
Csa07g00509 Csa-Chr7:3665194 Csa02g02104 Csa-Chr2:19152113 1.92E-26 transposed
Csa02g01300 Csa-Chr2:12644521 Csa02g02104 Csa-Chr2:19152113 1.05E-49 wgd
Csa02g02104 Csa-Chr2:19152113 Csa06g03304 Csa-Chr6:27677901 5.35E-22 wgd
Csa02g02104 Csa-Chr2:19152113 Csa07g00027 Csa-Chr7:395757 1.93E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31005 PF00643 zf-B_box 5.50E-06 No_clan Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02104 - - csv:101209573 576.244