Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02109 ATGGGAGGGGAAGAGCTAATAAAAGGTGTTATTAACAATTCAAATGGTCTTGAAGAAACAATTCGTGTTTCTATTAGGTTAAGACCATTGAATGAGAAGGAATTAATGAAAAATGACTCATCCGATTGGGAATGTATCAATAGTACCTCCGTTATGTTCAGAAGTACTTTACCCGAACGCTCCTTGTTTCCCCACTCTTACACGTTTGATAGAGTATTTGGAATTGATAGTACAACAAAACAAGTTTACGAGGAAGGGGCCAGAGAAGTTGTTCTCTCTGTCGTCAATGGAATTAATTCAACAATTTTTGCATACGGGCAAACAAGCAGTGGAAAGACTTTCACCATGAATGGTGTCACTCAACATTCTGTGGCAGACATTTATAGTTACATAGAGTCGCATCAAGACAGAGAATTTGTGCTGAAGTTTTCAGCAATTGAGATATATAATGAAGCTGTTAAAGATCTTCTCAGCTTAGAAAATGTTCCACTTAGACTGCTTGATGATCCTGAGAAAGGAACTGTTGTTGAGAAACTTACAGAGGAGATCTTGAAAGACAGGAATCATCTCCAAGAGCTTATTTCCTTCTGTGAAGTTCAAAGAAAGATAGGGGAGACGTCTCTTAATGAAACTAGCTCCAGATCACATCAAATCCTAAGACTAACAATTGAAAGCTCCGCTCGCAAATTCAAGAAGTCGGAAAGTTCAAGCACTCTCACGGCTACAGTGAATTTTGTTGACCTTGCGGGGAGTGAACGTGCTTCTCAAACAAATTCTGGTGGTACGAGACTGAAAGAGGGTTGCCACATCAACCGTAGTCTGCTGACTTTGGGAACTGTTATTCGTAAATTAAGCAAGGGAAGGAATGGACACATACCTTATAGAGACTCGAAGCTAACACGCATACTGCAGAATTCTCTAGGTGGTAACGGTCGAACAGCGATCATTTGTACTATGAGTCCTGCACGTAGCCATGTCGAACAATCGAGAAATACTTTGCTATTTGCTACTTGTGCAAAAGAAGTGAGTACAAATGCACATGTGAATGTGGTAGTCTCAGATAAGGCATTGGTGAAACAGTTGCAAAAAGAATTGGCTAGACTTGAGAGTGAGATGAAGAACTTAAAACCACTTCCTCTCAAAGGTGATTCTAATTCCTTATTGAAAGAGAAAGAACTTGTAATCGAACAGATGGACAAAGAGATTAAGGAATTGACTCGACAACGCGATCTTGCTCAATATCGAATTGAGAACTTGTTGCATTCGGTTGGAGAAGATAGAATATTTAAGTTAAGTGAAAGTACAGTACATACAATACCAGATCTAGTTGATCTAGATCTAGACCTACGTTCTGATGACTCAAGTTTCAAAGCTTTTGATGAGTCAAGTCTCAAAACTTTTGACACATTTACTGCACAAGAAGAGAATAGCCCTCACAAGATTGATCCTCTGTTCACTATGAATCATGAGGACGATTTTCTACTAGATAGCAGTACTCCTGAATTGGCTGGACCTGATCCTTATCAGGACTGGGAAGAGATTGCTGAACGCGTTCATGCAAATTCCGAAGATGGGTGTAAGGATGTTCAATGTATTGAACTGGAAGAGTTAAAAGAATTAGTAAATGAAAATGGTGATTTAACTTTAGCTACATGGGAAGACAATGAAGGGCAGATGATTAGTAGTTTTGACATTAATCCAGAGACATACCCTCAAAGGAGGAATAAGGAGATAATTCCAATCAGCAAAGGTCATACTTATGATGGTTTGATTCCAAAAGCTTCTGAGATAGGGAAAACGTTGAATTGTATAGTAAATCTTTATCCTTCTGAGCAATCTTTCAACTCAATCGAAGCAGCGAAAACTCGTTTTCAGAACTTAAAGTTGGAAAGAAGCAAAAGTTGTTTGACTGTTCTAATGACCATTCCACCTTCTACTTTGATTGAAAAGGTAAAAGAGGATAAGAAAATTCGAACTGTCGGATCTGATGTGAACTTCTCTGGAAAAGCAGAAGGTAGTCGAAGAAGGCGCGGTTTAAGCTGTGGAAATTTGGGGGCAAATTTGGAGGCAAATTTGGACACCAAGGACTCACAGTCTGTATGTAGTCGATGTTCGGATACAAAAACTTTACAAATAATAGAAGAAGATGATGATGATAATACTAGTGTTCTCAACTTTGCTACTGGAAAAAGAGGAAAGAGCAAAAATCGGATGAAGAAGCGATCTGGTTCGAGGTTGGGGAGTCTCTCTAAAAAGGAAGAACCTATAGAAGCCACACTAGAAGTTCAAACGCAAGAGGAAAAGGAACTTCAGGCTCATTCTGAATGGATTCTTGAGTTTCAAGGTCAACAAAGAGATATAATCGAGCTTTGGGATGCTTGCAATGTACCATTGGTGCACAGATCTTATTTCTTCATCCTTTTTAAAGGAGACCCTACTGATGCTGTATACATGGAAGTAGAGCTTAGAAGGTTGTTCTTTATAAGGGAAGCCATTTCTCGATCAGTTAATGGATCAGGAAGGGGCGACGCCGTCACACAAACTTCAAGCTTGAAGGCTCTAAACCGGGAAAGAGATATGTTGGCGAGGCGAATGAAAAAGAAGTTCACAGTGAAAGAAAGAGACGCCCTTTACGTGAAGTGGGGTATTGACTTGAAGACGAAGCAACGAAGCATACAAGTGGCACGAATGTTATGGTCGAGAACGAAGGATTTCGACCATATAAACGAAAGTGCTGCCCTTGTAGCAAAGCTCATTGGATTTGTGGAACCTAATCAGGTTTCTAGGGAAATGTTTGGGCTATCCATTTCACTCCAATCCTTAGATCACAGATCTTTCTCATGGAAAAGAAACATGTCTCTTCCCTTTTGA 2871 39.67 MGGEELIKGVINNSNGLEETIRVSIRLRPLNEKELMKNDSSDWECINSTSVMFRSTLPERSLFPHSYTFDRVFGIDSTTKQVYEEGAREVVLSVVNGINSTIFAYGQTSSGKTFTMNGVTQHSVADIYSYIESHQDREFVLKFSAIEIYNEAVKDLLSLENVPLRLLDDPEKGTVVEKLTEEILKDRNHLQELISFCEVQRKIGETSLNETSSRSHQILRLTIESSARKFKKSESSSTLTATVNFVDLAGSERASQTNSGGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAHVNVVVSDKALVKQLQKELARLESEMKNLKPLPLKGDSNSLLKEKELVIEQMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKLSESTVHTIPDLVDLDLDLRSDDSSFKAFDESSLKTFDTFTAQEENSPHKIDPLFTMNHEDDFLLDSSTPELAGPDPYQDWEEIAERVHANSEDGCKDVQCIELEELKELVNENGDLTLATWEDNEGQMISSFDINPETYPQRRNKEIIPISKGHTYDGLIPKASEIGKTLNCIVNLYPSEQSFNSIEAAKTRFQNLKLERSKSCLTVLMTIPPSTLIEKVKEDKKIRTVGSDVNFSGKAEGSRRRRGLSCGNLGANLEANLDTKDSQSVCSRCSDTKTLQIIEEDDDDNTSVLNFATGKRGKSKNRMKKRSGSRLGSLSKKEEPIEATLEVQTQEEKELQAHSEWILEFQGQQRDIIELWDACNVPLVHRSYFFILFKGDPTDAVYMEVELRRLFFIREAISRSVNGSGRGDAVTQTSSLKALNRERDMLARRMKKKFTVKERDALYVKWGIDLKTKQRSIQVARMLWSRTKDFDHINESAALVAKLIGFVEPNQVSREMFGLSISLQSLDHRSFSWKRNMSLPF* 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19175594 19181063 + CsaV3_2G029280.1 Csa02g02109 520166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02109 956 MobiDBLite consensus disorder prediction 730 750 - -
Csa02g02109 956 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02109 956 PRINTS Kinesin heavy chain signature 206 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02109 956 PRINTS Kinesin heavy chain signature 242 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02109 956 PRINTS Kinesin heavy chain signature 292 313 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02109 956 PANTHER KINESIN-LIKE PROTEIN KIN-7J 16 953 - -
Csa02g02109 956 SMART kinesin_4 18 350 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02109 956 CDD KISc_CENP_E 20 342 - -
Csa02g02109 956 Gene3D Kinesin motor domain 11 373 IPR036961 -
Csa02g02109 956 Coils Coil 388 422 - -
Csa02g02109 956 Coils Coil 351 378 - -
Csa02g02109 956 ProSiteProfiles Kinesin motor domain profile. 20 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02109 956 Pfam Kinesin motor domain 26 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02109 956 ProSitePatterns Kinesin motor domain signature. 241 252 IPR019821 GO:0003777|GO:0005524|GO:0007018
Csa02g02109 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 376 IPR027417 -
Csa02g02109 956 Pfam Domain of unknown function (DUF3490) 779 938 IPR021881 -
Csa02g02109 956 PANTHER CENTROMERE PROTEIN E 16 953 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02109 K11498 CENPE; centromeric protein E - csv:101212680 1857.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02109 Csa-Chr2:19175594 Csa04g00582 Csa-Chr4:3831401 0 dispersed
Csa05g01950 Csa-Chr5:22781800 Csa02g02109 Csa-Chr2:19175594 6.20E-38 transposed
Csa02g01301 Csa-Chr2:12650213 Csa02g02109 Csa-Chr2:19175594 4.02E-82 wgd
Csa02g02109 Csa-Chr2:19175594 Csa07g00039 Csa-Chr7:486158 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32