Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02112 ATGTCGTCCTCGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCTGCTGCGGCCCTTGTTTTCTCATGTATGGGAGCTGCTTACGGTACCGCAAAGAGCGGTGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCAGAATTGGTAATGAAGTCTATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCTAAGGCTAAATCTTATTATCTTTTCGATGGTTACGCTCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGTATCGTCGGCGATGCGGGCGTCAGGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCACTTGCTCTCTATGGACTTATTGTTGGTATTATTCTCTCCTCTCGAGCTGGTCAGTCAAGAGCTGATTAA 498 48.39 MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19193914 19196325 - CsaV3_2G029310.1 Csa02g02112 520169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02112 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Csa02g02112 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Csa02g02112 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa02g02112 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa02g02112 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa02g02112 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa02g02112 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Csa02g02112 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Csa02g02112 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Csa02g02112 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Csa02g02112 165 Gene3D - 11 162 IPR035921 -
Csa02g02112 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Csa02g02112 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Csa02g02112 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02112 Csa-Chr2:19193914 Csa03g01099 Csa-Chr3:8696334 4.09E-112 dispersed
Csa02g02112 Csa-Chr2:19193914 Csa02g02113 Csa-Chr2:19198082 9.19E-113 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02112 K02155 - cit:102619336 288.5