Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa02g02112 | ATGTCGTCCTCGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCTGCTGCGGCCCTTGTTTTCTCATGTATGGGAGCTGCTTACGGTACCGCAAAGAGCGGTGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCAGAATTGGTAATGAAGTCTATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCTAAGGCTAAATCTTATTATCTTTTCGATGGTTACGCTCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGTATCGTCGGCGATGCGGGCGTCAGGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCACTTGCTCTCTATGGACTTATTGTTGGTATTATTCTCTCCTCTCGAGCTGGTCAGTCAAGAGCTGATTAA | 498 | 48.39 | MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD* | 166 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 19193914 | 19196325 | - | CsaV3_2G029310.1 | Csa02g02112 | 520169 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa02g02112 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 13 | 77 | IPR035921 | - | |
| Csa02g02112 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 87 | 156 | IPR035921 | - | |
| Csa02g02112 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 30 | 54 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
| Csa02g02112 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 56 | 80 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
| Csa02g02112 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 107 | 133 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
| Csa02g02112 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 134 | 157 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
| Csa02g02112 | 165 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 165 | - | - | |
| Csa02g02112 | 165 | TIGRFAM | V_ATP_synt_C: V-type ATPase, C subunit | 13 | 121 | IPR011555 | GO:0033179|GO:0046961|GO:1902600 | |
| Csa02g02112 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 89 | 156 | - | - | |
| Csa02g02112 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 13 | 80 | - | - | |
| Csa02g02112 | 165 | Gene3D | - | 11 | 162 | IPR035921 | - | |
| Csa02g02112 | 165 | Pfam | ATP synthase subunit C | 97 | 155 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
| Csa02g02112 | 165 | Pfam | ATP synthase subunit C | 17 | 76 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
| Csa02g02112 | 165 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 165 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa02g02112 | K02155 | ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit | - | cit:102619336 | 288.5 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g02112 | Csa-Chr2:19193914 | Csa03g01099 | Csa-Chr3:8696334 | 4.09E-112 | dispersed | |
| Csa02g02112 | Csa-Chr2:19193914 | Csa02g02113 | Csa-Chr2:19198082 | 9.19E-113 | tandem |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g1050 | . | . | . | . | . | . | . | . | Cmo05g00293 | Cmo12g00375 | . | . | . | Car12g00401 | . | . | Cpe07g00380 | Bhi04g00233 | . | . | . | Hepe10g0130 | . | . | Cla08g01441 | Cam08g1922 | Cec08g1497 | . | Clacu08g1612 | . | Cre08g1398 | . | . | Cone17ag1386 | Cone20ag0095 | . | . | . | Cme03g01900 | Blo17g00753 | Blo18g00785 | Bda08g01232 | Bda01g01524 | Bpe02g01721 | Bpe05g00130 | Bma01g00735 | Bma05g00155 | . | . | . | Cma12g00425 | Cma05g00287 | Car05g00237 | . | Cpe11g00238 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi08g01343 | Csa02g02112 | Chy03g01404 | . |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Csa02g01881 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1619.0 | |
| Csa06g01652 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.2 | |
| Csa02g02102 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 1.0e-295 | 1012.7 | |
| Csa07g00020 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.4 | 1.4e-295 | 1012.3 | |
| Csa07g00020 | . | 6 | 819 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1229.9 | |
| Csa02g02102 | . | 1 | 809 | Primary Pumps ATPases(2) | AT2G21410 | 73.9 | 0.0e+00 | 1204.9 | |
| Csa06g01652 | . | 9 | 820 | Primary Pumps ATPases(2) | AT2G21410 | 62.1 | 6.6e-298 | 1020.0 | |
| Csa07g00020 | . | 8 | 819 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.3 | |
| Csa02g02102 | . | 1 | 809 | Primary Pumps ATPases(2) | AT4G39080 | 74.7 | 0.0e+00 | 1199.9 | |
| Csa06g01652 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 5.6e-297 | 1016.9 | |
| Csa03g01099 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 4.5e-61 | 230.7 | |
| Csa02g02112 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.0e-60 | 229.6 | |
| Csa02g02113 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.0e-60 | 229.6 | |
| Csa03g01099 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 81.4 | 2.7e-67 | 251.9 | |
| Csa02g02112 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 5.9e-67 | 250.8 | |
| Csa02g02113 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 5.9e-67 | 250.8 | |
| Csa03g01099 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 5.4e-74 | 273.9 | |
| Csa02g02112 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 9.2e-74 | 273.1 | |
| Csa02g02113 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.2e-73 | 272.7 | |
| Csa02g02112 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 3.3e-52 | 201.1 | |
| Csa02g02113 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Csa03g01099 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Csa03g04355 | . | 1 | 175 | Primary Pumps ATPases(2) | AT2G25610 | 84.0 | 2.6e-71 | 265.4 | |
| Csa02g02355 | . | 6 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.1 | 3.8e-70 | 261.5 | |
| Csa03g01099 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 1.3e-60 | 229.2 | |
| Csa02g02112 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Csa02g02113 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Csa03g04355 | . | 6 | 175 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 2.0e-73 | 272.3 | |
| Csa02g02355 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.8 | 1.4e-71 | 266.2 | |
| Csa01g02374 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 80.3 | 0.0e+00 | 1665.6 | |
| Csa01g02374 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.2 | 0.0e+00 | 1667.5 | |
| Csa02g01881 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1619.0 | |
| Csa01g02374 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.4 | 0.0e+00 | 1312.0 | |
| Csa01g03136 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.2e-57 | 219.2 | |
| Csa07g00121 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 1.4e-268 | 921.8 | |
| Csa05g01396 | . | 1 | 377 | Primary Pumps ATPases(2) | AT1G12840 | 83.0 | 1.8e-181 | 632.1 | |
| Csa06g02409 | . | 617 | 878 | Primary Pumps ATPases(2) | AT3G58730 | 82.1 | 1.6e-117 | 419.1 | |
| Csa03g03694 | . | 3 | 455 | Primary Pumps ATPases(2) | AT3G42050 | 79.7 | 3.4e-208 | 721.1 | |
| Csa03g01099 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 5.4e-74 | 273.9 | |
| Csa02g02112 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 9.2e-74 | 273.1 | |
| Csa02g02113 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.2e-73 | 272.7 | |
| Csa07g00121 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 2.3e-269 | 924.5 | |
| Csa03g02469 | . | 1 | 184 | Primary Pumps ATPases(2) | AT1G64200 | 73.3 | 1.8e-65 | 245.7 | |
| Csa07g00121 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 3.0e-266 | 914.1 | |
| Csa06g01652 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.2 | |
| Csa02g02102 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 1.0e-295 | 1012.7 | |
| Csa07g00020 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.4 | 1.4e-295 | 1012.3 | |
| Csa03g03857 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 4.5e-192 | 667.2 | |
| Csa03g02469 | . | 1 | 230 | Primary Pumps ATPases(2) | AT4G11150 | 76.6 | 5.7e-90 | 327.4 | |
| Csa07g02282 | . | 1 | 624 | Primary Pumps ATPases(2) | AT1G78900 | 92.6 | 0.0e+00 | 1166.4 | |
| Csa07g00121 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 1.4e-268 | 921.8 | |
| Csa07g00121 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 2.3e-269 | 924.5 | |
| Csa07g00121 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 3.0e-266 | 914.1 | |
| Csa05g01396 | . | 1 | 377 | Primary Pumps ATPases(2) | AT1G12840 | 83.0 | 1.8e-181 | 632.1 | |
| Csa06g02409 | . | 617 | 878 | Primary Pumps ATPases(2) | AT3G58730 | 82.1 | 1.6e-117 | 419.1 | |
| Csa03g02469 | . | 1 | 230 | Primary Pumps ATPases(2) | AT4G11150 | 76.6 | 5.7e-90 | 327.4 | |
| Csa03g02469 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 1.1e-75 | 280.0 | |
| Csa03g02469 | . | 1 | 184 | Primary Pumps ATPases(2) | AT1G64200 | 73.3 | 1.8e-65 | 245.7 | |
| Csa01g03136 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.2e-57 | 219.2 | |
| Csa03g03694 | . | 3 | 455 | Primary Pumps ATPases(2) | AT3G42050 | 79.7 | 3.4e-208 | 721.1 | |
| Csa06g01652 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.2 | |
| Csa02g02102 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 1.0e-295 | 1012.7 | |
| Csa07g00020 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.4 | 1.4e-295 | 1012.3 | |
| Csa07g00020 | . | 6 | 819 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1229.9 | |
| Csa02g02102 | . | 1 | 809 | Primary Pumps ATPases(2) | AT2G21410 | 73.9 | 0.0e+00 | 1204.9 | |
| Csa06g01652 | . | 9 | 820 | Primary Pumps ATPases(2) | AT2G21410 | 62.1 | 6.6e-298 | 1020.0 | |
| Csa07g00020 | . | 8 | 819 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.3 | |
| Csa02g02102 | . | 1 | 809 | Primary Pumps ATPases(2) | AT4G39080 | 74.7 | 0.0e+00 | 1199.9 | |
| Csa06g01652 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 5.6e-297 | 1016.9 | |
| Csa03g01099 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 4.5e-61 | 230.7 | |
| Csa02g02112 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.0e-60 | 229.6 | |
| Csa02g02113 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.0e-60 | 229.6 | |
| Csa02g02112 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 3.3e-52 | 201.1 | |
| Csa02g02113 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Csa03g01099 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Csa03g01099 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 1.3e-60 | 229.2 | |
| Csa02g02112 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Csa02g02113 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Csa03g01099 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 81.4 | 2.7e-67 | 251.9 | |
| Csa02g02112 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 5.9e-67 | 250.8 | |
| Csa02g02113 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 5.9e-67 | 250.8 | |
| Csa03g01099 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 5.4e-74 | 273.9 | |
| Csa02g02112 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 9.2e-74 | 273.1 | |
| Csa02g02113 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.2e-73 | 272.7 | |
| Csa03g04355 | . | 6 | 175 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 2.0e-73 | 272.3 | |
| Csa02g02355 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.8 | 1.4e-71 | 266.2 | |
| Csa03g04355 | . | 1 | 175 | Primary Pumps ATPases(2) | AT2G25610 | 84.0 | 2.6e-71 | 265.4 | |
| Csa02g02355 | . | 6 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.1 | 3.8e-70 | 261.5 | |
| Csa03g03857 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 3.9e-199 | 690.6 | |
| Csa03g03857 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 4.5e-192 | 667.2 | |
| Csa01g02374 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 80.3 | 0.0e+00 | 1665.6 | |
| Csa01g02374 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.4 | 0.0e+00 | 1312.0 | |
| Csa02g01881 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1619.0 | |
| Csa01g02374 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.2 | 0.0e+00 | 1667.5 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000593 | 4 | 3 | 2 | 4 | 4 | 2 | 6 | 2 | 1 | 3 | 2 | 3 | 4 | 3 | 3 | 5 | 3 | 7 | 5 | 3 | 3 | 4 | 3 | 3 | 2 | 3 | 3 | 6 | 3 | 3 | 102 |