Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02114 ATGGATGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGATGGTGGGTTTGACTCAGATGTTGATGAGCCCATTGGTTCTCTACTTAAGTTGAAGAGATCACGAAACTCTAAAAAAACTAAGTTGAATGTAGACGATGGCGGTGGAAGGGACAAGATGGTTGACAAGAAAGGAGCAAAATTGCCAGTGCAAGAGGACTTTGGTGGAATGGATGATACTTTAGCTAGTTTTAGAAAGAAGTTGAAGCGTCCTAAAAAGGTTAGTGGAACTGGAATTGCTAGGGAACAGAGTTCTGCTCTAAGCGTGACAGAATCTTTGAATCCATTATTTAATACATCCAAAGGACATGGGGACTTAGACACAAGATTGAGACCAGAAAATGGTGAATTAATGGATCGTGAGGATTCTGATTCATCTGCAAAGATTGATGCAGAAATGAGGTGTGAAGCACCTGATCTGGAATCAAAAGACATGGTGATGGGCATCTCTAGTAGGAGAAGTGCTAATTGCTCTTTGGATAAGCAGCTGGATGATTCATTGTCAGCATTTGTCCAAAAGGTTCAGTCTGGTTCAACTAGGAAATCAGTGGTATCTACAACATTTAGACCAGACTGCAAGGATGAGGCTTCTGAAGATAAATTGAGTCCTTTTTGTAGAGCTGTTTCTGAGGATCATGAAGCACACTCCATTGTGAGTATTAATTCTTCATCTAAGCTGGCACAAGTTGTCAAAAAACCAGATTCTGAACTTACTACATCATATTTAATTTCCTGTTCGCATTGCACCAAAGAGAACTGTAATCCTGGTCGGGGACAATGTCATCAAGGAATTAAACATGACCAAGAAGAGGATCCATGCTCTCTCAATGGTCACGAGAATCCTGACATGAGACCATGCATATCAAATGAAGTTGCTGATAAAGACAGCAAAAACTTTAGTCAATTTAGGGACAATTTCCGGGTGCTGGAAAGAAAAGCATCGTGTGAAATCAAGAATGTACTAAAACATTGTTCTTGTGGCAATACAATCACAAATAGCCATTTGGCAGAAATGGGTTCTTTTCAGGATGGGCTAGGTGAGAATCAAATTAATGAAAACATGTGCAGTTCTTGTCGTCCTCTAGAAAAGATAAACGAAAACCATGACCTTTGTGTGGGTGTTTCCAGCAGAGATTTTTGTGATGCGGTGGCCCAAGAGACCACAGTCAATTTGTCTAAAACAATTCCAGGTGTAGATTGTGAAGGGAAAGAAAGATTGCTTGTTAAATATCACGATGAATTGTCAAAATCTACCAATTTCTGTGAAAGTTCTTCCAATCCTCAGTTATCTGCAGGCTTTGATTCAACGAAAGTGGATAAAACTGACAGTGACTCTGATAATTTAAATACTGGAAATGATGAGCCAAACGACAAAGGTCGTTCTATGCAGAAGGAAAATGCTACGATCTCTAATAGGATAGATTCAACTGCTGTTCAATCTCTCACATTGCAAAAACTTGGGCCAAAGTATCCAGATTTTTGTCCTGGTGGAAATTTCAGCATGATATCAGATAGTCAACCGGCCAAGGTTCCACTGGAGATGGATGGTCCAAATAACATACTTACTGGTAAAGAGGTTAAGGTATCTTCTCTTGGGTCTTTCACTCCAGATGATAATGACCTTGAGGATGTAATATCTGCTCCTGAAAGTGAAAAAGATTTAAAGCTTTCAGCTTTACAGCGTGTAGCGCGCAAGACCAAGAAGCCCCGGCATGAGGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGATTAGTGAGCGTGCAGTTGATGGTGATCATTCTTTCAGATCAAGAAAGGATTCTACATCAACAACCTTTACAGAGGCTGAAACTGGTGGTAGGGCTGCGGTGTCTGCAGGGCTTAAGGCACATGCAGTTGGTCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACATAGCATGCAGGAACCAGATCCTGGGACTTTGGTGTAAAGATGTTACACGCATTTTGCGTCTTGTTGACTGTGGGGTTACTGATACTCCCTCTATGGATGAACCACCACGTTTCTCCCTTGTTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCCTCTGAGAAAGCCAAATCAGAATCTGACATTAAATATGATTATGAACTGGGAGAGAAAAAGGTTGGAGATGTTAGTGTTGCTTCAGCTGCTGATTCCGAGGAAGGGGTTTCTGTCATGGTAAAAAATTCCGATGCTTCTAATGCAGAGAATGATGTTTCAGCTGGCTGTGAAGTAATATTGAAGGATGCTGAAGGAAGAGACCCTGTGATTGCAAATAATTTGGATTTACCCAAACCAGTGGAACTCGAACAAGAATTGGTACATGACTTGGAGTACTGTATTCCTGATCCTACACAGGTAAAATTTGTTGGTGACGTTCCAGGTAAAGCTGCCTCACATTTAACTAATCAGTCAAGAAACAGTTGGGGCCCAATCTCCTCTGATGAGTGTGTAGGAGATGATCAACAACAGCAGAGTAATTCTGAAATAAAAAAGAAAGTAATTGTGATTGGAGCTGGTCCTGCTGGCTTAACTGCTGCAAAGCACTTGCTTCGACAGGGCTTTACTGTCACTGTACTGGAAGCTAGGAATAGGTTAGGAGGCCGTGTTCATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACGGGAGTAGAGGCTGATGTCGCAACTGAAAGAAGGCCCGATCCTTCCTCATTGATATGCACTCAATTGGGCCTCGAGTTGACTGTATTAAATAGTGACTGTCCCCTCTATGACATCATTACTTGCAAAAAAGTTCCACTAGACATGGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCGCAAAGAGGGGAGCATGCAATGGCTATGTCCCTTGAGGAAGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGAGGAATGGATGTTTGTTCTGAGGAAGAGGTTTTGAGTCCCTTTGAGAGGAGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAACTGGAACCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGGGGACTTGATGTTCGCCTAAACCATGTTGTGGCTGATATTTCTTACAGCACCAGTGACATTGGGTTTAATGGGAATCAATGTGCAAAGGTGAAAGTTTCCACAACCAATGGTTGCGAGTTTCTGGGAGATGCTGTCCTTATTACAGTGCCTCTTGGATGCTTGAAAGCAGAAACTATCAAGTTTTCACCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGGTTTGGGGTTCTTAACAAAATAGTTATTGAATTTCCTGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACGGCAGAGGAAACAAAATGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCGCCAGTTCTCATAGCATTAGTGGTTGGTCAGGCTGCTGTGGAGAGGCAATATATGAGCTCTTCCGACAATGTAAGCCATGCATTAATGGTCCTTCGCAAACTTTTTGGAGAAGCAGTAGTACCTGATCCAGTTGCATCAGTTGTAACTGATTGGGGAAGAGATCCATTTAGCTATGGTGCTTACTCATATGTTGCTGTTGGAGCGTCTGGAGAGGACTACGACATTTTAGCCAAACCTGTTGGAAAGTGTTTGTTCTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTGCGCATGATTGATATATTGAGTGATGGTTATGATTTCACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACATAATTACAAGACTTGAGGCTGTTAAGCTTTCTGACGCTCTTTACAAAAGTTCTTTGGATGGTGCCAGGATTTTGACCATAGAAGCTTTACTGCAAGATTTGTTCTTTAGTTCAAAAACGACAGCAGGAAGATTGCATGTGGCAAAGGAGTTGTTGAATCTCCCTGCTGAGACGTTGAAGTCCTTTGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTTTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAATGTGTTCGTATTCTTGTGGTAGTTTCAACAGATCTACTTGCAGTTCGCTTATCGGGCATAGGTAAAACCGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATCCGTGCCATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTCTTCCGTAAAGAAAAGGCTGCTAATGGGGGGCTAAAACTCTCTAAGTCGGTTTCTGCTGTAGAATTATTGAAGAGGAAATCTAATAAAGACTCTTCTTCTGGGAAACCTCCTTTGCACGCAAACAACAGCACACTGGATAGTAGAGGGAATTTGTTGACTGCTGCATCAGCGGCAATGCCCTTGCAGTCTGATGTCAATATGAAAAACGATAATAGCAAACAATTGAAATTTGAATTGGAAAACTCATCGAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTTGGAAAGCAGGATGCAGAGATGGAAGACAACATTGCTATGACAGAAGAAGAGGAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCCGCACTTGCAGCTGCGAAGGCCTATGCATCTGCTGAAGCCAAGAGTGCGATGCAACTCCCAAAAATCCCCTCCTTTCACAAATTTGCTCGACGGGAACATTATGCTCAAATGGATGAGTGTGAGTATAAAAAGAAGTTGTCTGGCAGTGTGCTGGGAAGGCAAGATTGTATATCCGAAATAGATTCAAGAAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCGGCAGATAACCTTTCGCAAAGAAGCCATTCAAATGAGATTGTTAGCCAATTGAACTTTAGGGAGCACTCCGGTGAAAGTGCTCCTGTGGATAGCAGTATATACACAAAGGCATGGGTTGATACAGCTGGTAGTGTTGGAATGAAAGATTATCACGCTATTGAGAGATGGCGCACTCAAGCAGCTGCAGCTCATGTAAATGATGAGGAGGATTCAAACACGAATTGGCATAAACCCATGTGGAATAATGATCAAGTAGCAAATGAGAGCTCAATATCACAAGTGACGATCAACAAGGAGCCCATGAGAAACCATCATCGTGGGGCTGACAGAATTAAGCAGGCTGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCGACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAGCGTAGGAACAAGATTCGTGCCTTTGTAGACAAATTGATAGAGAGACATATGGCTACAAAGCCTGTAACGAAGTCGTAA 5730 42.55 MDGDNKKSGFRKRTKPKDGGFDSDVDEPIGSLLKLKRSRNSKKTKLNVDDGGGRDKMVDKKGAKLPVQEDFGGMDDTLASFRKKLKRPKKVSGTGIAREQSSALSVTESLNPLFNTSKGHGDLDTRLRPENGELMDREDSDSSAKIDAEMRCEAPDLESKDMVMGISSRRSANCSLDKQLDDSLSAFVQKVQSGSTRKSVVSTTFRPDCKDEASEDKLSPFCRAVSEDHEAHSIVSINSSSKLAQVVKKPDSELTTSYLISCSHCTKENCNPGRGQCHQGIKHDQEEDPCSLNGHENPDMRPCISNEVADKDSKNFSQFRDNFRVLERKASCEIKNVLKHCSCGNTITNSHLAEMGSFQDGLGENQINENMCSSCRPLEKINENHDLCVGVSSRDFCDAVAQETTVNLSKTIPGVDCEGKERLLVKYHDELSKSTNFCESSSNPQLSAGFDSTKVDKTDSDSDNLNTGNDEPNDKGRSMQKENATISNRIDSTAVQSLTLQKLGPKYPDFCPGGNFSMISDSQPAKVPLEMDGPNNILTGKEVKVSSLGSFTPDDNDLEDVISAPESEKDLKLSALQRVARKTKKPRHEDMAYEGDIDWEVLISERAVDGDHSFRSRKDSTSTTFTEAETGGRAAVSAGLKAHAVGLLEKIKFKDVLKRKGGLQEYIACRNQILGLWCKDVTRILRLVDCGVTDTPSMDEPPRFSLVREIYAFLNLRGYINAGIASEKAKSESDIKYDYELGEKKVGDVSVASAADSEEGVSVMVKNSDASNAENDVSAGCEVILKDAEGRDPVIANNLDLPKPVELEQELVHDLEYCIPDPTQVKFVGDVPGKAASHLTNQSRNSWGPISSDECVGDDQQQQSNSEIKKKVIVIGAGPAGLTAAKHLLRQGFTVTVLEARNRLGGRVHTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIITCKKVPLDMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARGMDVCSEEEVLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLDVRLNHVVADISYSTSDIGFNGNQCAKVKVSTTNGCEFLGDAVLITVPLGCLKAETIKFSPPLPEWKRLSIQRLGFGVLNKIVIEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSDNVSHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILAKPVGKCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDILSDGYDFTAEVEAMEAAQRQSECENDEVGDIITRLEAVKLSDALYKSSLDGARILTIEALLQDLFFSSKTTAGRLHVAKELLNLPAETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVVVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVSAVELLKRKSNKDSSSGKPPLHANNSTLDSRGNLLTAASAAMPLQSDVNMKNDNSKQLKFELENSSKSDISSSRSRGSFGKQDAEMEDNIAMTEEEEAAFAAAEAARAAALAAAKAYASAEAKSAMQLPKIPSFHKFARREHYAQMDECEYKKKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVNDEEDSNTNWHKPMWNNDQVANESSISQVTINKEPMRNHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPVTKS* 1910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19203014 19211061 - CsaV3_2G029330.1 Csa02g02114 520171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02114 1909 MobiDBLite consensus disorder prediction 1528 1549 - -
Csa02g02114 1909 PANTHER FLAVIN MONOAMINE OXIDASE 572 1905 - -
Csa02g02114 1909 SUPERFAMILY FAD-linked reductases, C-terminal domain 1169 1280 - -
Csa02g02114 1909 MobiDBLite consensus disorder prediction 448 488 - -
Csa02g02114 1909 MobiDBLite consensus disorder prediction 454 478 - -
Csa02g02114 1909 SUPERFAMILY Homeodomain-like 633 727 IPR009057 -
Csa02g02114 1909 MobiDBLite consensus disorder prediction 1 33 - -
Csa02g02114 1909 Pfam SWIRM domain 643 721 IPR007526 GO:0005515
Csa02g02114 1909 Gene3D - 872 1329 IPR036188 -
Csa02g02114 1909 MobiDBLite consensus disorder prediction 1 73 - -
Csa02g02114 1909 ProSiteProfiles SWIRM domain profile. 631 731 IPR007526 GO:0005515
Csa02g02114 1909 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 572 1905 - -
Csa02g02114 1909 MobiDBLite consensus disorder prediction 1584 1599 - -
Csa02g02114 1909 Pfam Flavin containing amine oxidoreductase 880 1331 IPR002937 GO:0016491
Csa02g02114 1909 MobiDBLite consensus disorder prediction 1582 1603 - -
Csa02g02114 1909 Gene3D - 959 1286 - -
Csa02g02114 1909 MobiDBLite consensus disorder prediction 42 66 - -
Csa02g02114 1909 PRINTS Adrenodoxin reductase family signature 871 893 - -
Csa02g02114 1909 PRINTS Adrenodoxin reductase family signature 894 907 - -
Csa02g02114 1909 Gene3D - 631 734 IPR036388 -
Csa02g02114 1909 SUPERFAMILY FAD/NAD(P)-binding domain 869 1333 IPR036188 -
Csa02g02114 1909 MobiDBLite consensus disorder prediction 86 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02114 - - - csv:101212190 3711.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00048 Csa-Chr2:405036 Csa02g02114 Csa-Chr2:19203014 1.65E-31 dispersed
Csa02g02114 Csa-Chr2:19203014 Csa06g02286 Csa-Chr6:20505014 2.94E-93 dispersed
Csa06g00108 Csa-Chr6:724357 Csa02g02114 Csa-Chr2:19203014 3.02E-06 dispersed
Csa02g02114 Csa-Chr2:19203014 Csa04g00749 Csa-Chr4:5107549 1.32E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31006 PF01593 Amino_oxidase 6.10E-100 CL0063 Csa TR