Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02118 ATGGATGACAGTGGACACCGTGAGAATGGAAGGCACAAACCAGATCAGTATAAGTCAGCTCAGGGTCAGTGGATGATGCAGCATCAGCCCTCAATGAAGCAGATAATGGCAATTATGGCTGAAAGAGACGCAGCCATTCAAGAAAGAAATTTGGCCCTCTCGGAGAAAAAGGCTGCACTGGCAGAGCGAGACATGGCATATCTACAGCGAGACGCTGCAATTGCAGAGAGGAACAATGCCCTTTTGGAACGAGACAACGCCATTGCTACTCTTCAGTATCGTGAAAACTCCATAAATAACAATTTATCATGTCCACCAGGATGCCAAATTGCTAGGGGAGTGAAGCATATACATCATCCACAGCAGCAACACACACATCATGTGCCTCACATGAATGAGAATAATTACAATTCAAGAGAAATGCTTGCTTCCAACGACCCTTGCCCAACATCCCCTGTCGCTTCTGAATCAACAAAGGCACGACGAAACAAGCGTCCAAAAGAGGGAAAGACAGTCCCAACACCAAACAAGAAAGTTTCAAAAGGTCCACGGAAGGTCAAAAGGGAGGCTGAAGACTTGAACAAAATAATGTTGGGGAAGTCACAAGAATGGAAGGATGGAATTGGTATAATGAGTGCAGGTGACGATCTTAATAAACAGTTGGTAGTATCAAAATCAGATTGGAAAGGCCAGGATTTAGGATTAAACCAGGTTGCATTTGACGAATCAACCATGCCAGCTCCTATATGCTCCTGCACAGGAGTAATAAGACAATGCTACAAATGGGGGAATGGTGGATGGCAATCTGCATGTTGTACTACCACCCTCTCAATGTATCCATTACCTGCCGTTCCCAACAAACGACATGCTCGACTTGGCGGTCGGAAAATGAGCGGAAGTGCTTTTAACAAACTGCTTAGCCGCCTTGCAGCCGAAGGCCACGACCTATCCGCTCCAGTTGATCTTAAAAATCACTGGGCAAAGCATGGAACAAATCGTTACATCACCATCAAGTAG 1017 45.53 MDDSGHRENGRHKPDQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSINNNLSCPPGCQIARGVKHIHHPQQQHTHHVPHMNENNYNSREMLASNDPCPTSPVASESTKARRNKRPKEGKTVPTPNKKVSKGPRKVKREAEDLNKIMLGKSQEWKDGIGIMSAGDDLNKQLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19227774 19232675 + CsaV3_2G029370.1 Csa02g02118 520175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02118 338 Pfam GAGA binding protein-like family 1 338 IPR010409 -
Csa02g02118 338 MobiDBLite consensus disorder prediction 158 174 - -
Csa02g02118 338 Coils Coil 58 85 - -
Csa02g02118 338 MobiDBLite consensus disorder prediction 1 15 - -
Csa02g02118 338 MobiDBLite consensus disorder prediction 139 157 - -
Csa02g02118 338 PANTHER - 213 338 IPR010409 -
Csa02g02118 338 PANTHER - 1 206 IPR010409 -
Csa02g02118 338 SMART GAGA_bind_2 1 338 IPR010409 -
Csa02g02118 338 MobiDBLite consensus disorder prediction 1 23 - -
Csa02g02118 338 MobiDBLite consensus disorder prediction 139 187 - -
Csa02g02118 338 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 206 - -
Csa02g02118 338 PANTHER PROTEIN BASIC PENTACYSTEINE6 213 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02118 - - - csv:101207697 683.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02118 Csa-Chr2:19227774 Csa05g01291 Csa-Chr5:13703373 3.54E-43 dispersed
Csa02g02118 Csa-Chr2:19227774 Csa07g00049 Csa-Chr7:550696 1.18E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1060 . . . . . . . . Cmo05g00298 Cmo12g00369 . . . Car12g00396 . . Cpe07g00376 Bhi04g00239 . . . . . . . . . . . . . . . . . . . . . Blo17g00751 . Bda08g01227 Bda01g01528 Bpe02g01724 Bpe05g00134 . . . . . . Cma05g00293 Car05g00242 . Cpe11g00243 . . . . . . . . . . . . . . . . Csa02g02118 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01290 . 1 280 BBR/BPC Transcription factor family AT2G01930 55.3 6.6e-80 294.3
Csa05g01291 . 1 277 BBR/BPC Transcription factor family AT2G01930 51.7 2.6e-68 255.8
Csa05g01290 . 161 280 BBR/BPC Transcription factor family AT2G35550 60.0 1.1e-40 163.7
Csa05g01291 . 158 277 BBR/BPC Transcription factor family AT2G35550 58.3 1.8e-40 162.9
Csa02g02118 . 224 339 BBR/BPC Transcription factor family AT2G35550 59.5 1.7e-38 156.4
Csa07g00049 . 207 314 BBR/BPC Transcription factor family AT2G35550 59.3 4.2e-37 151.8
Csa02g02118 . 232 339 BBR/BPC Transcription factor family AT1G68120 57.4 3.9e-37 152.1
Csa07g00049 . 1 314 BBR/BPC Transcription factor family AT2G21240 62.7 3.3e-82 302.0
Csa02g02118 . 1 339 BBR/BPC Transcription factor family AT2G21240 51.6 2.2e-62 236.1
Csa07g00049 . 1 314 BBR/BPC Transcription factor family AT4G38910 59.6 1.8e-69 259.6
Csa02g02118 . 1 339 BBR/BPC Transcription factor family AT4G38910 50.1 3.2e-58 222.2
Csa02g02118 . 88 339 BBR/BPC Transcription factor family AT5G42520 61.7 4.6e-81 298.1
Csa05g01290 . 161 280 BBR/BPC Transcription factor family AT2G35550 60.0 1.1e-40 163.7
Csa05g01291 . 158 277 BBR/BPC Transcription factor family AT2G35550 58.3 1.8e-40 162.9
Csa02g02118 . 224 339 BBR/BPC Transcription factor family AT2G35550 59.5 1.7e-38 156.4
Csa07g00049 . 207 314 BBR/BPC Transcription factor family AT2G35550 59.3 4.2e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31007 PF06217 GAGA_bind 5.90E-107 No_clan Csa TF