Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02119 ATGGGAAGGCCTCGTTCATGCTTCCAAGTAATCACATGTGGTGGCGATTTGAAGGATGGAGATGAGATCGATGTACTTGAGAGTAAGGAGTCCAAAGACAAACGATGCTGGAGTTTCCGTAAGAGATCTTCCCAGCATCGTGTGCTAAACAACACAGTGAGTGCAGAAGCTCCTTCTGTAGCGAAGGAGAACCTTGAAACTGCTACATTCGACTTCCAATCATCAGCTGCGAAGGAGAACCTTGAAACTGCTACATTCGATTTCCAATCATCAGCTGCAAAGGAGAACCTTGAAACTGCTCCATTCGACTTCCAATCATCAGCTAACTCCACTGTTCCTGAGAAACCCACTGTAAAACACTTAACCGATGAGGAGACCCATGCGCCTATCGTCGAGAATCCTAAAGGATCTGATAAGGTGGATGAGGTGGATGTTGCATCTGAAAAAGAAAGTAATGTCGATCGTGAGCTTGAGGAATCTACTGTTATTGCCATCCAGACTGGTGTCAGGGGGCTATTGGCGCAGAAGGAGCTGATTAAACTTAAGAATGTAGTGAAGGTGCAAGCTGCTGTTCGTGGATTCTTGGTAAGGAGACATGCTGTCGGAACACTCCGCTGTGCTCAAGCCATTGTCAAAATGCAAGCTATTGTACGTGCTCGTCGTGCTCATCTCTCTCCGGAACGATTGGCTCCAGATGAACAGCACAATAAGAATGAGAAGGAAAATCTTGATTCAAAGAACGTGGTAAAGGGAGAGCTGGACAGTTCAAAATCCAATTTGCGATATATTTCAATTGAAAAGCTACTTAGCAATAGTTTTGCCCGGCAGTTGTTGGAATCAACACCAAGGAACAAACCAATCAATATCAAGTGCGTTCCTTCCAAAAATGATTCTGCTTGGAAATGGTTGGAGCGCTGGATGGCTGTTTCATCATTGGATGTCTTGGAGGCAAAGAATGAAGAATTAGTCCCTGATCAAATGGAAAAAGAAGCTGAGGAGCCGAAGAAAGAAGAATTAGAAGAATCAGACGCTGAGCAATTGAAAAGAGGAATCGAGGAATCACATTTTGAAGATCCAGTTGACTTAAACCCGTTGTCTGAAACAGAAGATTTGAATTCCGGCACCTTAAAATTAGTTTCACCATGTGAAAGTGAAGATTTAAATACTTATAGTGCCAATAACTTACAATCTCAAACCAGCTGCTCTCCATCTTCATTAGAAAATGATAATCTTGAGCAGCCTCGGCCTGAGACTGCTAAAATATCTGAAACTGAAGAGACAGCAACTAAGGTTAGTTCTGTACAACACGAGAAAATACAGACGGATGATGTAGATGTGCAAACAGAGTCAAACTCCTCCTCCGATAAACCTCAGATGGAAAGCGAGCAAGTCAATCCTCTGAAAAGATTAGCACCTGAACAACTGGAGAATGAGGGCAAGAAATTTGGATCTAGAAAGATGAACAATCCCTCATTTATCAATGCGCAGGCAAAATTTGAACAGTTGAGTTCAGCACCCGATTTGATTGGAAGTATTAGTTCGATGAATCAAGATGATAGAATCGAACCTCATTCAGAAACAGTGTCATCTGCATTGGAGGATACTGTACCAAGGACAAAGGAAACGAGTGCAGTTGAAAATATCGTCACTCCTGCATGTAGGATAATTCAAGTCAGTGGCTCTGAATGTGGTACCGAGCTCTCTATTTCTTCCACCCTTGATTCACCTGATATATCTGAAGCAGGAATGGCAGATCCACTTCCAAATGATGTTTCGGAGAAAGTAGTCCAAGATCCTAGCAGTGATCTAAGCGTAGAAGTTGAAATGAAGGCTTCTACAACTCCAGTGCAAAATGATATCCAACTTCTTCTGGATCAATCAGCAGAAGAAGCCAGTGAATCTAACGGCTATTCCATCACTTCAGTACCTGTTGTAGACTCTTCCCCAAGTGAATCAAAGCTAGGGAGAAGTTCATCAGATCAACAGAGAGAACAACAGGAGGCTGGTTCGCATCATGATAATCAAACATATAAATCTTCTCCAGAAGCTTCTCCAAGAAGCCATTTAACTGTTCCAGAATCCCAAGGAACACCTTCAAGTCAGGTATCGACGAAGGCAAAACGGGATAAAACTGATAAAGCAGTCTCTTTTCAGAAGCAAAAGCCTATATCAGCAGTAAAGAAATCACCATCCAGTTTAAATCGGAATTCTGCCTCGAGGAGTAGTACAGATAATTCTTACAAAGATCAGAAGACTGGAAAGAGGAGGAATTCGTTTGAAGCACGACAGGAAAACCTTGAAAAGGAATTAAAAGAGAGCAGTAGCAGTAGCTCTCTTCCTCACTTTATGCAAGCCACAGAATCCGCTAGAGCCAAGGCTCAGTCAACTAATTCTCCAAGATCAAGTCCGGATGTTCAAGATGGAGAAATATACCTCAAGAAAAGGCATTCCTTGCCTGCTGATGGCCGGCAAGTATCTCCACGCGTCCTGCAGCCAACATCTCGAACCCAGCAGGGAGCGAAAGGAAATGATAAAATGTGGCGAAGGTAA 2550 42.94 MGRPRSCFQVITCGGDLKDGDEIDVLESKESKDKRCWSFRKRSSQHRVLNNTVSAEAPSVAKENLETATFDFQSSAAKENLETATFDFQSSAAKENLETAPFDFQSSANSTVPEKPTVKHLTDEETHAPIVENPKGSDKVDEVDVASEKESNVDRELEESTVIAIQTGVRGLLAQKELIKLKNVVKVQAAVRGFLVRRHAVGTLRCAQAIVKMQAIVRARRAHLSPERLAPDEQHNKNEKENLDSKNVVKGELDSSKSNLRYISIEKLLSNSFARQLLESTPRNKPINIKCVPSKNDSAWKWLERWMAVSSLDVLEAKNEELVPDQMEKEAEEPKKEELEESDAEQLKRGIEESHFEDPVDLNPLSETEDLNSGTLKLVSPCESEDLNTYSANNLQSQTSCSPSSLENDNLEQPRPETAKISETEETATKVSSVQHEKIQTDDVDVQTESNSSSDKPQMESEQVNPLKRLAPEQLENEGKKFGSRKMNNPSFINAQAKFEQLSSAPDLIGSISSMNQDDRIEPHSETVSSALEDTVPRTKETSAVENIVTPACRIIQVSGSECGTELSISSTLDSPDISEAGMADPLPNDVSEKVVQDPSSDLSVEVEMKASTTPVQNDIQLLLDQSAEEASESNGYSITSVPVVDSSPSESKLGRSSSDQQREQQEAGSHHDNQTYKSSPEASPRSHLTVPESQGTPSSQVSTKAKRDKTDKAVSFQKQKPISAVKKSPSSLNRNSASRSSTDNSYKDQKTGKRRNSFEARQENLEKELKESSSSSSLPHFMQATESARAKAQSTNSPRSSPDVQDGEIYLKKRHSLPADGRQVSPRVLQPTSRTQQGAKGNDKMWRR* 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19240785 19245750 + CsaV3_2G029380.1 Csa02g02119 520176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02119 849 Pfam IQ calmodulin-binding motif 182 199 IPR000048 GO:0005515
Csa02g02119 849 MobiDBLite consensus disorder prediction 606 656 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 226 245 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 657 671 - -
Csa02g02119 849 Coils Coil 756 776 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 105 140 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 827 841 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 772 804 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 747 771 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 117 140 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 509 543 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 321 362 - -
Csa02g02119 849 PANTHER PROTEIN IQ-DOMAIN 32 1 844 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 321 372 - -
Csa02g02119 849 PANTHER IQ-DOMAIN 5-RELATED 1 844 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 567 849 - -
Csa02g02119 849 Gene3D - 158 205 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 394 489 - -
Csa02g02119 849 ProSiteProfiles IQ motif profile. 158 186 IPR000048 GO:0005515
Csa02g02119 849 MobiDBLite consensus disorder prediction 528 543 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 445 461 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 413 444 - -
Csa02g02119 849 Pfam Protein of unknown function (DUF4005) 763 824 IPR025064 -
Csa02g02119 849 SMART iq_5 157 179 IPR000048 GO:0005515
Csa02g02119 849 SMART iq_5 180 201 IPR000048 GO:0005515
Csa02g02119 849 MobiDBLite consensus disorder prediction 722 746 - -
Csa02g02119 849 ProSiteProfiles IQ motif profile. 180 209 IPR000048 GO:0005515
Csa02g02119 849 MobiDBLite consensus disorder prediction 807 821 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 394 412 - -
Csa02g02119 849 MobiDBLite consensus disorder prediction 672 704 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02119 - - - csv:101211948 1586.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02119 Csa03g04258 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02119 Csa-Chr2:19240785 Csa01g00786 Csa-Chr1:4969091 5.00E-06 dispersed
Csa02g02119 Csa-Chr2:19240785 Csa03g04258 Csa-Chr3:37321497 1.18E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62