Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02120 ATGCGGGGATTGCACAAAGGGAAAAGGGTTTCATGGGCCTCAGATCTTAATCTTCGTCAGGTTAGGTTGTTTTCGTCTGAGGACTGTCCTTCCCAAGTGGGATTGGGTGCTCAAGATCACCTTCAAGCAAAGGCATCGTGGCTCTTGCATTCAACTGGTTTGGGTTTGGGTTCTGATGATACTTTGCCTCCTGGATTTGAAGTTGCTCATCCAGAGAATCAGTGGCAGATAAAGCTCTCACAAATTCCTGTAAATCAATGGAGATGTCCACCTAAGTTTGTGCTGAATTTGACGTGGCGAGTGGTTGTTGGTGAAGAAAGCCAAGAGGTAGATGTTGAAAATCAGAGAGAGATGAGAGTATTTGAAGCGGTTTATCCTCGGGCATCTGCAATTCCTCCTAACCCTTCTGTAGTACCTGATTCAGAACGTGCCAATGTTGATGACAGTCGGACACCTCTGATTCCCATTACTCCTGTTGAAGATGAAGATGGAGCAACCGAGTCTTCCTCCGATTATGCAATTCCAGCCTCTGGCCTTACGAGTGCACAGCCCTCCCTATTTGTTCCTGCTGGTACTTCCACATCTCAACATGCTTTACTGAATGCAATGTGTTCTACTTCTAATGTGAGTTCCATGGTTGGAGTGGATTTTGGCAACGAACGTGATGTTGTCGCTGCTGCATCAGCGGCACTCAGTGCACTAGTAAAGACCAATGAAGTAGGTAACTCAATTGACCGTGAATTGCTTGTTAATATTCTCAACAATCCAAAAATGATCGAACAGCTGGTTGTGGATTCTGGTGCTTTGACTAGCACTCAAAAGCCAATATCATCTCCCGACCCACCGCTTGTACATATGCATATGTCTGATACCAATGCCACCATTACGCCTATATCGAGCAGTTCTTTTTATTCTCAACCAAATGGAGGGAGTGTAGGACCTGTCTCCAATGCACACCCGTCCTCAAGGGGCATACCTGTTTCTTCCCTGCCCTCCACCGGAGCCCCAATGAGGGACTTGAATTACTATAAAAGTTTGATTCAGCAACATGGAGGGGAGAGACAAGACGATCCCCCTCGGCAGCAATTCGTGAACCGTCACAATCAGCCAATGGGCACAAACCAGGAGTTCTTACAGAACCAGCCATCAAGAGATGCGAAGTTCAAGATAATGAAGCCTTGCATATACTTTAACAGCTCGAGAGGATGTCGGCATGGGGCCAATTGCGCATATCAGCATGACCCCATGTTCCAGCAGAGAAGTAGTAGCGTGTCAGAAATGCCTAGCTCCAAGAGAACGAAAGTCGATAGAGAAATCAGCAGTTAA 1326 46.53 MRGLHKGKRVSWASDLNLRQVRLFSSEDCPSQVGLGAQDHLQAKASWLLHSTGLGLGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPKFVLNLTWRVVVGEESQEVDVENQREMRVFEAVYPRASAIPPNPSVVPDSERANVDDSRTPLIPITPVEDEDGATESSSDYAIPASGLTSAQPSLFVPAGTSTSQHALLNAMCSTSNVSSMVGVDFGNERDVVAAASAALSALVKTNEVGNSIDRELLVNILNNPKMIEQLVVDSGALTSTQKPISSPDPPLVHMHMSDTNATITPISSSSFYSQPNGGSVGPVSNAHPSSRGIPVSSLPSTGAPMRDLNYYKSLIQQHGGERQDDPPRQQFVNRHNQPMGTNQEFLQNQPSRDAKFKIMKPCIYFNSSRGCRHGANCAYQHDPMFQQRSSSVSEMPSSKRTKVDREISS* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19246857 19251025 + CsaV3_2G029390.1 Csa02g02120 520177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02120 441 MobiDBLite consensus disorder prediction 420 441 - -
Csa02g02120 441 MobiDBLite consensus disorder prediction 132 175 - -
Csa02g02120 441 MobiDBLite consensus disorder prediction 362 376 - -
Csa02g02120 441 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 436 - -
Csa02g02120 441 ProSiteProfiles Zinc finger C3H1-type profile. 388 416 IPR000571 GO:0046872
Csa02g02120 441 SUPERFAMILY CCCH zinc finger 393 424 IPR036855 GO:0046872
Csa02g02120 441 MobiDBLite consensus disorder prediction 299 329 - -
Csa02g02120 441 MobiDBLite consensus disorder prediction 299 334 - -
Csa02g02120 441 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 436 - -
Csa02g02120 441 MobiDBLite consensus disorder prediction 350 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02120 - - - csv:101207454 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02120 Csa-Chr2:19246857 Csa06g03301 Csa-Chr6:27652162 7.33E-73 dispersed
Csa07g01804 Csa-Chr7:18309937 Csa02g02120 Csa-Chr2:19246857 2.28E-06 transposed
Csa02g02120 Csa-Chr2:19246857 Csa06g03311 Csa-Chr6:27719713 4.51E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007937 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31008 None None None None Csa TF