Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02126 ATGTCGAAGGCCGTCGAGGATCTCATCTTCCGCCACCGCCACTCTGATTTTTCATTTCATCACCTTAGCTCTCACTCTAACCATCGCGACATGTCGTCTTTTGCTTCTTCTTCCTCAGCTCTAGCTCTTCCGCCTCAGTGTTGTCTTCAGTATCATCGGCCTTCTCCACCGTCGGATCAGTCTAACGTTTGCGACGCCCGTCTCTCTTCCGAGGCACATTCTACAGTTTCTACGATAGATTTGAAACGAGCATATGATATTAACAACTCCGAGGCTTTGGCTAGCAGACAAGTCGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAGAAATTTAAGTTGCAGAAGAATTCGAAGTCTAAGACTCGAAAATCAATAGATGAGCCTGTTGATAGCCCTAATCAATCTACTAACGGTCGGTATGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTCCAAAAGAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGCCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGAGGCGAGAGGCGTGGACCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTCATAAGGATGAAACAAGAACTTCTTAGAAATCTCGAGCAAAATGCACACTACAGGAATCACCTTTTTATAACAGAAGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAAACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATTGAAGTACCCGATCCAGACGAGGAGGCTTGTTTTTCCGAGAGGCAATGTAGAATGATCATCAAAAGCACCACTGGGCCAATTGATTTATACCTCTTGAGGACTGCAAAACAAGAGCTGGAAGAAAATACTTCCAAGCAAGCAAAACTATGTTTAGCACAGCAGAAGAATCCTAACATATTTACCAACAACACTTATTCTCCTTTCCAAGACCTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCACAAGTGAGTATTACGCATTTATGGGGTGAGGAACACAACTTTTAA 1233 41.04 MSKAVEDLIFRHRHSDFSFHHLSSHSNHRDMSSFASSSSALALPPQCCLQYHRPSPPSDQSNVCDARLSSEAHSTVSTIDLKRAYDINNSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKFKLQKNSKSKTRKSIDEPVDSPNQSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLKDEVKSLYADERRLDELIRMKQELLRNLEQNAHYRNHLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRMIIKSTTGPIDLYLLRTAKQELEENTSKQAKLCLAQQKNPNIFTNNTYSPFQDLHGMQRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19295233 19299695 - CsaV3_2G029450.1 Csa02g02126 520183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02126 410 Coils Coil 246 266 - -
Csa02g02126 410 PANTHER TRANSCRIPTION FACTOR E2F 7 407 IPR015633 GO:0000978|GO:0006357
Csa02g02126 410 CDD E2F_DD 230 334 IPR032198 GO:0046983
Csa02g02126 410 SMART E2F_TDP_2 154 219 IPR003316 GO:0005667|GO:0006355
Csa02g02126 410 Gene3D - 226 336 - -
Csa02g02126 410 SUPERFAMILY Winged helix DNA-binding domain 154 217 IPR036390 -
Csa02g02126 410 Gene3D - 148 221 IPR036388 -
Csa02g02126 410 Pfam E2F/DP family winged-helix DNA-binding domain 156 219 IPR003316 GO:0005667|GO:0006355
Csa02g02126 410 MobiDBLite consensus disorder prediction 98 156 - -
Csa02g02126 410 PANTHER TRANSCRIPTION FACTOR E2FC 7 407 - -
Csa02g02126 410 SUPERFAMILY E2F-DP heterodimerization region 231 334 IPR037241 -
Csa02g02126 410 Pfam E2F transcription factor CC-MB domain 235 334 IPR032198 GO:0046983
Csa02g02126 410 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02126 Csa-Chr2:19295233 Csa06g02465 Csa-Chr6:21931322 9.34E-78 dispersed
Csa02g02126 Csa-Chr2:19295233 Csa01g00185 Csa-Chr1:1197260 2.76E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31009 PF16421 E2F_CC-MB 9.40E-27 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02126 K06620 - csv:101211469 780.015