Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02126 ATGTCGAAGGCCGTCGAGGATCTCATCTTCCGCCACCGCCACTCTGATTTTTCATTTCATCACCTTAGCTCTCACTCTAACCATCGCGACATGTCGTCTTTTGCTTCTTCTTCCTCAGCTCTAGCTCTTCCGCCTCAGTGTTGTCTTCAGTATCATCGGCCTTCTCCACCGTCGGATCAGTCTAACGTTTGCGACGCCCGTCTCTCTTCCGAGGCACATTCTACAGTTTCTACGATAGATTTGAAACGAGCATATGATATTAACAACTCCGAGGCTTTGGCTAGCAGACAAGTCGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAGAAATTTAAGTTGCAGAAGAATTCGAAGTCTAAGACTCGAAAATCAATAGATGAGCCTGTTGATAGCCCTAATCAATCTACTAACGGTCGGTATGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTCCAAAAGAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGCCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGAGGCGAGAGGCGTGGACCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTCATAAGGATGAAACAAGAACTTCTTAGAAATCTCGAGCAAAATGCACACTACAGGAATCACCTTTTTATAACAGAAGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAAACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATTGAAGTACCCGATCCAGACGAGGAGGCTTGTTTTTCCGAGAGGCAATGTAGAATGATCATCAAAAGCACCACTGGGCCAATTGATTTATACCTCTTGAGGACTGCAAAACAAGAGCTGGAAGAAAATACTTCCAAGCAAGCAAAACTATGTTTAGCACAGCAGAAGAATCCTAACATATTTACCAACAACACTTATTCTCCTTTCCAAGACCTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCACAAGTGAGTATTACGCATTTATGGGGTGAGGAACACAACTTTTAA 1233 41.04 MSKAVEDLIFRHRHSDFSFHHLSSHSNHRDMSSFASSSSALALPPQCCLQYHRPSPPSDQSNVCDARLSSEAHSTVSTIDLKRAYDINNSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKFKLQKNSKSKTRKSIDEPVDSPNQSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLKDEVKSLYADERRLDELIRMKQELLRNLEQNAHYRNHLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRMIIKSTTGPIDLYLLRTAKQELEENTSKQAKLCLAQQKNPNIFTNNTYSPFQDLHGMQRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19295233 19299695 - CsaV3_2G029450.1 Csa02g02126 520183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02126 410 Coils Coil 246 266 - -
Csa02g02126 410 PANTHER TRANSCRIPTION FACTOR E2F 7 407 IPR015633 GO:0000978|GO:0006357
Csa02g02126 410 CDD E2F_DD 230 334 IPR032198 GO:0046983
Csa02g02126 410 SMART E2F_TDP_2 154 219 IPR003316 GO:0005667|GO:0006355
Csa02g02126 410 Gene3D - 226 336 - -
Csa02g02126 410 SUPERFAMILY Winged helix DNA-binding domain 154 217 IPR036390 -
Csa02g02126 410 Gene3D - 148 221 IPR036388 -
Csa02g02126 410 Pfam E2F/DP family winged-helix DNA-binding domain 156 219 IPR003316 GO:0005667|GO:0006355
Csa02g02126 410 MobiDBLite consensus disorder prediction 98 156 - -
Csa02g02126 410 PANTHER TRANSCRIPTION FACTOR E2FC 7 407 - -
Csa02g02126 410 SUPERFAMILY E2F-DP heterodimerization region 231 334 IPR037241 -
Csa02g02126 410 Pfam E2F transcription factor CC-MB domain 235 334 IPR032198 GO:0046983
Csa02g02126 410 MobiDBLite consensus disorder prediction 98 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02126 K06620 E2F3; transcription factor E2F3 - csv:101211469 780.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02126 Csa-Chr2:19295233 Csa06g02465 Csa-Chr6:21931322 9.34E-78 dispersed
Csa02g02126 Csa-Chr2:19295233 Csa01g00185 Csa-Chr1:1197260 2.76E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31009 PF16421 E2F_CC-MB 9.40E-27 No_clan Csa TF