Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02140 ATGGCGGTGACTGGAACTCAATTTTTATTGGCCATTCTAAATCTGCTGCTGTTGGTACCGGGTGGGTTTTCGACGAGCTTTACTTTTGTGAACAAATGTGATTTCACGGTTTGGCCGGGGATTCTGTCCAACGGCGGCGTTCCACCGCTTCTCACTACAGGCTTCTCTCTTCAGAGTGGAGAGTCGAAGACGCTACCGGCGCCGGCGTCTTGGGGCGGGCGTTTCTGGGGGAGAACACTCTGTTCTGAAGATTCCACCGGGAAATTCTCTTGCGCTACTGGCGACTGTGGCTCTAACAAATTAGAGTGTGCTGGAAACGGCGCAACCCCACCGGCTACTCTTGCGGAGTTCACTCTGGACGGCTCTGGCGGGCTTGATTTCTTCGACGTCAGTCTGGTGGACGGTTACAATCTTCCGATGATAGTTGTGCCTCAGGGTGGTTCCGGCGATAACTGCACGAGTACCGGCTGTGTTGTGGATCTCAATGGTGCGTGTCCATCAGAGCTGCGCGTGACGAGTGCCGACGGAAGAGAAGGCGTCGCGTGTAAAAGCGCGTGTGATGCTTTCAACCAACCACAGTATTGCTGCACAGGCGCGTACCAAACACCGGACACTTGTCAGCCGTCGATGTACTCTCAGATATTCAAGAAAGCGTGCCCACGCGCTTACAGCTACGCGTACGATGATAAGACGAGCACTTTCACATGCGCCAGTGCTGATTATGTCATTACATTCTGTCCATCGCCAAACACCAGGTAA 759 53.62 MAVTGTQFLLAILNLLLLVPGGFSTSFTFVNKCDFTVWPGILSNGGVPPLLTTGFSLQSGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNQPQYCCTGAYQTPDTCQPSMYSQIFKKACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTR* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19375453 19378328 + CsaV3_2G029590.1 Csa02g02140 520197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02140 252 CDD TLP-PA 26 246 - -
Csa02g02140 252 PANTHER OS03G0233200 PROTEIN 15 250 IPR001938 -
Csa02g02140 252 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Csa02g02140 252 PANTHER BNAA02G17480D PROTEIN 15 250 - -
Csa02g02140 252 Pfam Thaumatin family 31 247 IPR001938 -
Csa02g02140 252 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Csa02g02140 252 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Csa02g02140 252 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Csa02g02140 252 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Csa02g02140 252 Gene3D Thaumatin 25 247 IPR037176 -
Csa02g02140 252 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Csa02g02140 252 SMART tha2 27 247 IPR001938 -
Csa02g02140 252 PIRSF PR5 1 252 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02140 Csa-Chr2:19375453 Csa03g00075 Csa-Chr3:614891 2.27E-108 dispersed
Csa02g02140 Csa-Chr2:19375453 Csa02g02142 Csa-Chr2:19383919 1.18E-98 proximal
Csa01g00710 Csa-Chr1:4504091 Csa02g02140 Csa-Chr2:19375453 7.31E-82 transposed
Csa03g03320 Csa-Chr3:30193289 Csa02g02140 Csa-Chr2:19375453 3.07E-38 transposed
Csa07g02039 Csa-Chr7:19782143 Csa02g02140 Csa-Chr2:19375453 1.06E-82 transposed
Csa02g02140 Csa-Chr2:19375453 Csa03g04288 Csa-Chr3:37543700 2.66E-141 wgd
Csa02g02140 Csa-Chr2:19375453 Csa06g03333 Csa-Chr6:27851431 1.15E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02140 - - csv:101204094 523.472