Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02143 ATGGAGAACGGCAGTCCATTGCAGTGTCCAAACACGGTGACTGTTCGGAGAAACCCTCACCGGAGAGCAAGAGCTACGCCGGCTGCCAAAGCAGCAGCCGAATCCAATCTTACATCTGCCATTTCTTCATTTCCACTTCAAGAAATTCTTGCGATGGAAGTCCCTCAAAACCCTAAAGACAATTCATCATCATCGTCATCCGTTCAAACTTCTCTCTCCGAAAACCTGAAAGTGTACCTTAGAGTTCGACCTTTGCAACTGAAGAATTTGAAGAAGTCCGGAAATCCTGGTGATCAAAATTCGAGGTCCGGACATGTATGGCCTCAGAACCCTCAGAAGAAGAAAGTAGCGAAGGAGAAGAATGTTAAGAAGAAGAGCAGTGAGACCTGTATAACGATTAACGACGATCACTCAGTAACAGTCTGTCCACCCATGGCATTACAAGAGACTAGGCGGAGCAAGTCTGAGGTTTACGAAGGATTTTCCCATGTGTTTTCTATGGAATCCTCTCAGGATGAGGTGTATGAGAGGATGGTTAGTCCTTTAGTGGAGGAATTTCTGAAGGGAAAAAGTGGAATGCTGACTGCACTTGGTCCGAGCGGATCGGGTAAGACCCATACCATTTTTGGCAGTCCAAGAGTTCCTGGTATGGTTCCACTGGCCCTTCAACATATTTTCAGGACAGAGTCGAGTGATTCCAAGACCTCCAGATCATATTACCTGTCAATCTTTGAAATATACTCAGAAAAAGGAAAAGGAGAAAAGATGAACGATCTTTCAGCAGATGGGGGTGAGTTAACTATGCAGCAGTTTACTATCAAGGGCCTTAAAGAGGTTTTAATTTCTAAAGCTGGAGAAGCTGAATCATTAGTGGCTTGTGCAATGGCTAAGCGTGCCACTGCAATTACGAATGCAAATAGCACATCGAGCCGGTCCCAATGCATCATTAATGTGCGTAGAGTTGCTAACCAAGAAGAAGTTGAAGATGCTTCGAACTGTGCCATCTTGACCATTGCTGATCTTGCTGGAGCTGAAAAAGAAAAAAGAACCGGGAATCAGGGTACAAGATTACTTGAAGCTAACTTCATCAATAATACATCAATGGTTTTTGGCTTGTGCCTAAGATCATTGTTTGAACACCAAAGGAATCCAAAGAAGCCACTGCAGAAGCATTTCCAGAACTCTTTGTTGACCAAGTACCTTCGAGATTACCTGGAAGGAAAGAAGCGAATGACCTTGATTTTAACTGTGAAAGCAGGAGAAGAAGATTATCTTGATACAACTTTCCTTCTCAGACAAGCTTCACCTTATATGAAAATCAAGTTCAACAATGTCGTGGAACCATCCAACACCAACAAGAGACAATTGCAAACGTTATGTACATTTGAGGAGCAGAAAAGAACAAAATATAGTGCTCCTGAAGCATGTGTGAATGAAGGAAAGAGACATCCCAAGGAAAACCTGCTTGCTCATGAAGAACTTTCCGGTCATCCCAAAGGTAAAGCCACAAAGTCTAGCCGTACAGAATTGGCTGGGATTGAAAGAAACCATTTGATTATGCAAAATTTTTCTAAAGCCATATGGAAAACCTTGAAGCAGTATAGAGATAAACTAAAGAGTGCAGAGAATGAAAATCAAATTCTTCGAGAAGAAATTAGGCAGGAAAAGATGAGATATTTTGAGCTGGAAAAAAAATGGCAAAGTTCAAGATGTAGTACTTGCTCCAAGAAAGATTGTGCCGAAGCGGATTCATCTGTCGAAGTAGCTTCAGATTTTGAGTTAAATAGTGATTTGGAGGAGCACAGATTCAACAATTCTCACGAGATAATTACGAACTCTTTCATCAAAGTGAAGGAATCTGAGGGAAATAAATCTCCAGAAAGACGTGGCTCCTCTCCCTGTGAAGATAGAAATAGTTGCTCAAAACTTGATGAAGATAAAGAGGCACATATAGACAGTATAGACGAGACCACTCCTAGGAATAAGTGCAACATGGCGAAAAAACTTACATATGTGGAAGCAGATGATAGTTGTCCGACAACAAATCCTATAGCCTTTAGCACCCTGCAGACCCATAACTTGGTGAAGCACGACAGCTGTTCATCGGTAGAGTTGGACAAACTCAGTGAACAAGAGGAATCTACCTCAGTCGAATCACATTTACAAGTAGCCTCGAATATTCACTGCAATGCTCATGCATGTGAAACTCAACCTGTACCTGATACTTCATTAAATCAATCAACTTCAGAGGAGTCTGATAGGGATTCAGGTGCTTTGAATGAAGACCAGGAACTCTTAGGGGAATTTTCCGGTTCTCAGCATGTACCTCTCACGGAGGATGTTGAATCTTATCAAGAACAAGAGCACAAAAAGGATGTGCATTGCAGTGATCCAAGCACTGACATCTCATGCAAACTAGAGAAACCAAAAAGGAGACTTCTGCCCGCATCATCGACACTATTGCGGGATTTCAGCAATATGCACGTCGAGGATGATATTGAGGCGTCAAAGGTAAACAGAAATGGGAAAAAATCAGCCAAAGGCGAAAAACTTCGAACACAGGGTAACATCTCCCTCATTCGCATGCTGAAGAGTAATCTCCGGTTCTAG 2610 42.26 MENGSPLQCPNTVTVRRNPHRRARATPAAKAAAESNLTSAISSFPLQEILAMEVPQNPKDNSSSSSSVQTSLSENLKVYLRVRPLQLKNLKKSGNPGDQNSRSGHVWPQNPQKKKVAKEKNVKKKSSETCITINDDHSVTVCPPMALQETRRSKSEVYEGFSHVFSMESSQDEVYERMVSPLVEEFLKGKSGMLTALGPSGSGKTHTIFGSPRVPGMVPLALQHIFRTESSDSKTSRSYYLSIFEIYSEKGKGEKMNDLSADGGELTMQQFTIKGLKEVLISKAGEAESLVACAMAKRATAITNANSTSSRSQCIINVRRVANQEEVEDASNCAILTIADLAGAEKEKRTGNQGTRLLEANFINNTSMVFGLCLRSLFEHQRNPKKPLQKHFQNSLLTKYLRDYLEGKKRMTLILTVKAGEEDYLDTTFLLRQASPYMKIKFNNVVEPSNTNKRQLQTLCTFEEQKRTKYSAPEACVNEGKRHPKENLLAHEELSGHPKGKATKSSRTELAGIERNHLIMQNFSKAIWKTLKQYRDKLKSAENENQILREEIRQEKMRYFELEKKWQSSRCSTCSKKDCAEADSSVEVASDFELNSDLEEHRFNNSHEIITNSFIKVKESEGNKSPERRGSSPCEDRNSCSKLDEDKEAHIDSIDETTPRNKCNMAKKLTYVEADDSCPTTNPIAFSTLQTHNLVKHDSCSSVELDKLSEQEESTSVESHLQVASNIHCNAHACETQPVPDTSLNQSTSEESDRDSGALNEDQELLGEFSGSQHVPLTEDVESYQEQEHKKDVHCSDPSTDISCKLEKPKRRLLPASSTLLRDFSNMHVEDDIEASKVNRNGKKSAKGEKLRTQGNISLIRMLKSNLRF* 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19387760 19397426 - CsaV3_2G029620.1 Csa02g02143 520200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02143 869 PANTHER KINESIN-LIKE PROTEIN KIF23 71 785 - -
Csa02g02143 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 441 IPR027417 -
Csa02g02143 869 MobiDBLite consensus disorder prediction 1 35 - -
Csa02g02143 869 Gene3D Kinesin motor domain 71 476 IPR036961 -
Csa02g02143 869 MobiDBLite consensus disorder prediction 1 15 - -
Csa02g02143 869 MobiDBLite consensus disorder prediction 92 108 - -
Csa02g02143 869 MobiDBLite consensus disorder prediction 620 641 - -
Csa02g02143 869 PRINTS Kinesin heavy chain signature 189 210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02143 869 PRINTS Kinesin heavy chain signature 303 320 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02143 869 PRINTS Kinesin heavy chain signature 335 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02143 869 PRINTS Kinesin heavy chain signature 390 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02143 869 Coils Coil 531 565 - -
Csa02g02143 869 SMART kinesin_4 73 448 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02143 869 PANTHER KINESIN-RELATED 71 785 IPR027640 GO:0003777|GO:0007018
Csa02g02143 869 Pfam Kinesin motor domain 126 435 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa02g02143 869 MobiDBLite consensus disorder prediction 736 758 - -
Csa02g02143 869 MobiDBLite consensus disorder prediction 112 127 - -
Csa02g02143 869 MobiDBLite consensus disorder prediction 736 753 - -
Csa02g02143 869 MobiDBLite consensus disorder prediction 619 641 - -
Csa02g02143 869 MobiDBLite consensus disorder prediction 89 127 - -
Csa02g02143 869 ProSiteProfiles Kinesin motor domain profile. 75 440 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02143 K10401 KIF18_19; kinesin family member 18/19 - csv:101210482 1680.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02143 Csa-Chr2:19387760 Csa03g03720 Csa-Chr3:33048956 1.72E-25 dispersed
Csa02g02143 Csa-Chr2:19387760 Csa01g02368 Csa-Chr1:20861355 1.70E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1139 . . . . . . . . . . . . . . . . . Bhi04g00138 . . . Hepe10g0163 . . Cla08g01415 Cam08g1894 Cec08g1471 Cco08g1604 Clacu08g1586 . Cre08g1369 . . . Cone20ag0437 . . . Cme03g01871 Blo17g00740 . Bda08g01213 . . Bpe05g00146 . . . . . Cma12g00402 . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g01310 Csa02g02143 Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005587 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 37