Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02145 ATGGGGTTGCTTAGTAGTATACTGGGTTTCTTCGGTTTTGGCTTGGGAACTTCGATTGGGCTTGTGGCTGGATATTACATGTTCATCTATTTTCAGCCATCAGATGTCAAGGATCCTGTTGTTCGCCCTTTGGTTGAGCAAGATTCTGCCTCATTGTTGCGGATGATGCCAGAAATACCTCTATGGGTGAAAAATCCTGATTACGATCGTGTTGACTGGCTCAACAAATTCCTTGAAATTATGTGGCCTTACTTGGACAAGGCCATTTGCAAGACTGTGAGGAACATAGCAAAGCCTATTATTGCAGAGCAAATTCCAAAATACAAAATCGATGCTGTTGAATTTGACACTCTAACATTGGGCTGCTTACCGCCAACTTTACAAGGAATGAAAGTTTATATGACTGATGATAAAGAGCTGATCATGGAGCCATGTATGAAGTGGGCGGGAAATCCAAATGTTACTGTTTCAGTGAAAGCATTTGGATTGAAAGCGACAGTTCAGGTGGTTGATTTGCAAGTGTTTGCTATTCCACGTATCACCCTAAAGCCTTTGGTCCCAAGCTTTCCTTGCTTTGCCAAAATATTTGTGTCTCTCATGGAGAAGCCCCATGTCGATTTTGGACTGAAATTGCTCGGTGCAGATGCAATGTCCATCCCGGGGCTGTATAGGTTTGTTCAGGAACTAATAAAAGATCAAGTTGCCAATATGTATCTATGGCCCAAAACCCTTGAAGTACAGATAATGGACCCTGCGAATGCCATGAAGAAGCCTGTTGGCATCCTTCATGTGAAGGTTTTGAGAGCACTAAAGCTTAAAAAGAAAGATCTATTTGGCGCATCAGATCCATATTTAAAACTGAAGCTCACTGAAGACAAGCTTCCTTCTAAGAAAACAACTGTGAAACACACTAATTTGAACCCAGTATGGAATGAGGAGTTTACTTTTGTCGTGAAAGATCCCGAATCTCAAGCTCTGGAAATGATTCTTTATGATTGGGAGCAGGTTGGCAAGCACGATAAGATGGGAATGAACGTTGTTCCGTTGAAAGAACTTACACCTGAAGAGTCCAAGGAATTTACTCTTGACGTGTTGAAAAATATGGATCCTAATGATACACAAAATGAGAAGTCGAGAGGGCAGATTGTTGTGGAAATGTTGTACAAACCTTTCAAGGACGATGAAGCTCTGAAAAGTGTTGATGATGCTGAAGCAGTTCAAAAGGCTCCTGATGGAACTCCTGCTGGTGGAGGCTTGCTCGTTATCATGATCCATCAAGCAGAAGATGTGGAAGGGAAGCACCATACAAACCCCTACGTCCGTTTGCTTTTCAGAGGAGAAGAGAAAAGAACTAAGCATGTTAAGAAGAACCGAGATCCAAGATGGGATGAGGAGTTTCAGTTTACGCTCGAGGAGCCGCCTGTCAACGATAAGATCCATGTGGAAGTACTTAGTGCCTCTTCAAGGATAGGCCTGCTTCACCCCAAGGAAACTTTGGGCTACGTGGACATAAATCTTGCTGATGTTGTCTCAAACAAGAGGATTAACGCGAAGTATCATCTCATCGACTCGAAGAACGGTCGGATCCAAATCGAGCTACAATGGAGAACTTCATCATAG 1620 42.84 MGLLSSILGFFGFGLGTSIGLVAGYYMFIYFQPSDVKDPVVRPLVEQDSASLLRMMPEIPLWVKNPDYDRVDWLNKFLEIMWPYLDKAICKTVRNIAKPIIAEQIPKYKIDAVEFDTLTLGCLPPTLQGMKVYMTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRITLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVQIMDPANAMKKPVGILHVKVLRALKLKKKDLFGASDPYLKLKLTEDKLPSKKTTVKHTNLNPVWNEEFTFVVKDPESQALEMILYDWEQVGKHDKMGMNVVPLKELTPEESKEFTLDVLKNMDPNDTQNEKSRGQIVVEMLYKPFKDDEALKSVDDAEAVQKAPDGTPAGGGLLVIMIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFTLEEPPVNDKIHVEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTSS* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19406220 19411036 - CsaV3_2G029640.1 Csa02g02145 520202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02145 539 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
Csa02g02145 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Csa02g02145 539 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 537 - -
Csa02g02145 539 PRINTS C2 domain signature 277 289 IPR000008 -
Csa02g02145 539 PRINTS C2 domain signature 304 317 IPR000008 -
Csa02g02145 539 PRINTS C2 domain signature 326 334 IPR000008 -
Csa02g02145 539 CDD C2 262 359 - -
Csa02g02145 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 392 IPR035892 -
Csa02g02145 539 Pfam C2 domain 419 521 IPR000008 -
Csa02g02145 539 Pfam C2 domain 260 359 IPR000008 -
Csa02g02145 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Csa02g02145 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Csa02g02145 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 537 IPR045050 GO:0008289
Csa02g02145 539 Gene3D C2 domain 419 538 IPR035892 -
Csa02g02145 539 Gene3D C2 domain 245 390 IPR035892 -
Csa02g02145 539 SMART C2_3c 261 361 IPR000008 -
Csa02g02145 539 SMART C2_3c 419 518 IPR000008 -
Csa02g02145 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02145 - - - csv:101203849 1062.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01388 Csa-Chr2:13293670 Csa02g02145 Csa-Chr2:19406220 0 dispersed
Csa02g02145 Csa-Chr2:19406220 Csa05g02801 Csa-Chr5:28572732 0 dispersed
Csa02g02145 Csa-Chr2:19406220 Csa07g00094 Csa-Chr7:881728 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1140 . . . . . . . . Cmo05g00317 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0067 . . . . . . . . . Bpe05g00147 . Bma05g00171 . . . . Cma05g00316 Car05g00262 . Cpe11g00263 . . . . . . . . . . . . . . . . Csa02g02145 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96