Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02163 ATGGCTGCCGCTCCTTCTGTTCGTGAGGAGAATGTTTACATGGCTAAGCTTGCCGAGCAGGCTGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCTCTTGACAAGGAGGAACTCACCGTCGAGGAGAGAAACCTCCTTTCTGTCGCTTACAAGAACGTCATCGGTGCTCGTAGGGCCTCCTGGCGTATCATTTCCTCCATCGAACAGAAGGAGGAGAGCCGAGGTAACGATGACCATGTCTCTGTGATCCGTGACTACAGATCCAAAATTGAGACCGAACTCTCCAATATTTGCGATGGAATCCTTAAGCTTCTTGATTCTAGACTCATTCCCTCCGCTGCTTCCGGAGATTCCAAGGTTTTTTACCTCAAAATGAAGGGCGATTACCATAGATACCTTGCCGAGTTCAAAACCGGAGCCGAACGCAAGGAAGCTGCTGAAAGCACTCTTACTGCTTACAAAGCCGCTCAGGATATTGCAAATTCTGAGTTGCCTCCTACACATCCGATCCGACTTGGATTGGCACTTAACTTCTCTGTATTCTATTATGAAATTTTGAATTCCCCTGATCGTGCCTGCAGTCTTGCGAAACAGGCATTTGATGAAGCTATCGCCGAGTTGGATACCCTTGGAGAGGAATCCTACAAAGATAGTACTTTGATCATGCAGCTTCTTCGGGATAATCTCACTCTCTGGACATCGGACATGCAGGATGATGGAGCTGATGAGATTAAAGAAGCTCCACCGAAGCGTGAGGATGAAAAGCAGTGA 786 48.09 MAAAPSVREENVYMAKLAEQAERYEEMVEFMEKVSASLDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRDYRSKIETELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANSELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAPPKREDEKQ* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19525778 19528220 + CsaV3_2G029820.1 Csa02g02163 520220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02163 261 MobiDBLite consensus disorder prediction 242 261 - -
Csa02g02163 261 Gene3D - 2 251 IPR036815 -
Csa02g02163 261 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 5 253 - -
Csa02g02163 261 SMART 1433_4 8 251 IPR023410 -
Csa02g02163 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Csa02g02163 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Csa02g02163 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Csa02g02163 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Csa02g02163 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Csa02g02163 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Csa02g02163 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Csa02g02163 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Csa02g02163 261 PIRSF 14-3-3 2 250 IPR000308 -
Csa02g02163 261 Coils Coil 14 41 - -
Csa02g02163 261 PANTHER 14-3-3 PROTEIN 5 253 IPR000308 -
Csa02g02163 261 MobiDBLite consensus disorder prediction 243 261 - -
Csa02g02163 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Csa02g02163 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02163 K06630 YWHAE; 14-3-3 protein epsilon - csv:101220164 509.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02163 Csa03g04457 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02163 Csa-Chr2:19525778 Csa05g02506 Csa-Chr5:26677086 4.28E-129 dispersed
Csa03g04481 Csa-Chr3:39056155 Csa02g02163 Csa-Chr2:19525778 4.89E-136 transposed
Csa04g00880 Csa-Chr4:6317654 Csa02g02163 Csa-Chr2:19525778 7.24E-164 transposed
Csa02g02225 Csa-Chr2:19987096 Csa02g02163 Csa-Chr2:19525778 3.25E-135 transposed
Csa02g02163 Csa-Chr2:19525778 Csa03g04457 Csa-Chr3:38853484 1.82E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g442 . . Bda01g00893 Bda03g00486 . Bpe04g00439 . . Cmo05g00534 Cmo12g00129 Cma01g01616 Cma09g00568 Car01g01232 Car12g00154 Sed04g0158 Cpe06g00431 Cpe07g00142 Bhi04g00777 Tan02g2410 Cmetu03g2141 . Hepe10g0481 . Lcy13g1545 Cla08g01123 Cam08g1580 Cec08g1150 Cco08g1276 Clacu08g1281 . Cre08g1063 . . . . Lsi04g02246 Csa03g04457 Chy04g00245 Cme03g01852 Blo17g00112 Blo18g00127 . Bda13g01393 Bpe02g01128 Bpe14g00462 Bma01g01396 Bma02g00132 Sed05g1594 Cmo01g01661 Cmo09g00555 Cma12g00167 Cma05g00507 Car05g00457 Car09g00495 Cpe11g00447 Cpe02g00365 Bhi09g02451 Tan01g3801 Cmetu04g2791 . Hepe01g2137 Mch11g0676 . Cla11g01392 Cam11g1448 Cec11g1476 Cco11g1473 Clacu11g1607 Cmu11g1426 Cre11g1846 Lsi08g00980 Csa02g02163 Chy03g01354 Cme04g00274
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02163 CCT 4 242 14-3-3 family AT4G09000 91.2 2.8e-119 425.2
Csa03g04457 CCT 5 242 14-3-3 family AT4G09000 90.8 4.0e-118 421.4
Csa04g00880 . 4 241 14-3-3 family AT4G09000 87.0 2.3e-113 405.6
Csa03g04481 . 11 246 14-3-3 family AT4G09000 75.4 2.5e-99 359.0
Csa02g02225 . 10 246 14-3-3 family AT4G09000 74.7 2.7e-98 355.5
Csa07g00466 . 7 238 14-3-3 family AT4G09000 73.1 1.5e-93 339.7
Csa05g02506 . 4 239 14-3-3 family AT4G09000 72.3 3.2e-91 332.0
Csa06g02080 . 4 239 14-3-3 family AT4G09000 71.8 1.6e-90 329.7
Csa02g02151 CCT,ECH 5 236 14-3-3 family AT4G09000 70.1 3.9e-89 325.1
Csa03g04446 CCT,ECH 5 236 14-3-3 family AT4G09000 71.8 1.6e-87 319.7
Csa02g02163 CCT 6 262 14-3-3 family AT1G78300 89.9 2.3e-124 441.8
Csa03g04457 CCT 5 258 14-3-3 family AT1G78300 90.2 2.6e-123 438.3
Csa04g00880 . 6 253 14-3-3 family AT1G78300 87.1 3.6e-117 417.9
Csa03g04481 . 11 247 14-3-3 family AT1G78300 75.9 4.0e-100 361.3
Csa02g02225 . 11 247 14-3-3 family AT1G78300 75.5 1.2e-99 359.8
Csa07g00466 . 7 247 14-3-3 family AT1G78300 71.2 4.3e-94 341.3
Csa05g02506 . 8 260 14-3-3 family AT1G78300 70.2 2.4e-92 335.5
Csa06g02080 . 8 257 14-3-3 family AT1G78300 69.8 2.4e-92 335.5
Csa02g02151 CCT,ECH 1 250 14-3-3 family AT1G78300 67.9 1.5e-91 332.8
Csa03g04446 CCT,ECH 1 248 14-3-3 family AT1G78300 68.0 7.9e-88 320.5
Csa04g00880 . 6 259 14-3-3 family AT5G38480 90.2 1.5e-123 439.1
Csa02g02163 CCT 6 252 14-3-3 family AT5G38480 85.4 2.2e-114 408.7
Csa03g04457 CCT 6 252 14-3-3 family AT5G38480 85.0 1.1e-113 406.4
Csa02g02225 . 10 251 14-3-3 family AT5G38480 74.4 1.4e-97 352.8
Csa03g04481 . 10 251 14-3-3 family AT5G38480 73.6 1.8e-97 352.4
Csa05g02506 . 8 255 14-3-3 family AT5G38480 73.2 7.2e-94 340.5
Csa07g00466 . 7 247 14-3-3 family AT5G38480 72.0 8.0e-93 337.0
Csa06g02080 . 8 255 14-3-3 family AT5G38480 71.2 3.0e-92 335.1
Csa02g02151 CCT,ECH 5 247 14-3-3 family AT5G38480 71.4 6.8e-92 334.0
Csa03g04446 CCT,ECH 5 242 14-3-3 family AT5G38480 70.8 3.8e-87 318.2
Csa02g02163 CCT 3 242 14-3-3 family AT1G35160 89.6 2.9e-118 421.8
Csa03g04457 CCT 4 242 14-3-3 family AT1G35160 89.1 4.1e-117 417.9
Csa04g00880 . 3 240 14-3-3 family AT1G35160 86.6 2.3e-112 402.1
Csa03g04481 . 11 246 14-3-3 family AT1G35160 76.7 2.7e-100 362.1
Csa02g02225 . 1 246 14-3-3 family AT1G35160 73.6 1.9e-98 355.9
Csa07g00466 . 2 237 14-3-3 family AT1G35160 71.0 2.7e-92 335.5
Csa05g02506 . 8 239 14-3-3 family AT1G35160 73.1 3.9e-91 331.6
Csa06g02080 . 8 239 14-3-3 family AT1G35160 72.6 2.5e-90 328.9
Csa02g02151 CCT,ECH 5 236 14-3-3 family AT1G35160 69.7 3.6e-89 325.1
Csa03g04446 CCT,ECH 5 236 14-3-3 family AT1G35160 71.8 2.0e-87 319.3
Csa04g00880 . 4 254 14-3-3 family AT5G16050 86.5 7.6e-118 420.2
Csa02g02163 CCT 3 253 14-3-3 family AT5G16050 78.9 2.4e-108 388.7
Csa03g04457 CCT 4 251 14-3-3 family AT5G16050 79.1 3.3e-105 378.3
Csa02g02225 . 10 248 14-3-3 family AT5G16050 71.1 1.4e-92 336.3
Csa03g04481 . 10 248 14-3-3 family AT5G16050 70.3 7.1e-92 334.0
Csa05g02506 . 3 246 14-3-3 family AT5G16050 65.4 6.5e-85 310.8
Csa06g02080 . 3 246 14-3-3 family AT5G16050 65.4 8.4e-85 310.5
Csa07g00466 . 1 246 14-3-3 family AT5G16050 65.1 1.9e-84 309.3
Csa02g02151 CCT,ECH 2 247 14-3-3 family AT5G16050 64.9 3.2e-84 308.5
Csa03g04446 CCT,ECH 5 239 14-3-3 family AT5G16050 66.2 4.1e-79 291.6
Csa02g02225 . 9 246 14-3-3 family AT5G10450 87.4 4.0e-114 407.9
Csa03g04481 . 9 246 14-3-3 family AT5G10450 84.9 9.1e-111 396.7
Csa02g02163 CCT 3 251 14-3-3 family AT5G10450 76.4 3.7e-104 374.8
Csa04g00880 . 4 259 14-3-3 family AT5G10450 73.9 1.1e-103 373.2
Csa03g04457 CCT 1 242 14-3-3 family AT5G10450 78.6 2.4e-103 372.1
Csa07g00466 . 1 238 14-3-3 family AT5G10450 68.0 1.7e-88 322.8
Csa02g02151 CCT,ECH 5 236 14-3-3 family AT5G10450 67.2 2.3e-85 312.4
Csa05g02506 . 3 239 14-3-3 family AT5G10450 66.3 1.5e-84 309.7
Csa06g02080 . 3 239 14-3-3 family AT5G10450 64.6 8.0e-83 303.9
Csa03g04446 CCT,ECH 5 236 14-3-3 family AT5G10450 66.8 2.3e-82 302.4
Csa04g00880 . 6 260 14-3-3 family AT3G02520 93.0 1.2e-128 456.1
Csa02g02163 CCT 6 252 14-3-3 family AT3G02520 86.7 1.7e-117 419.1
Csa03g04457 CCT 5 258 14-3-3 family AT3G02520 84.4 3.1e-116 414.8
Csa02g02225 . 10 248 14-3-3 family AT3G02520 75.7 5.4e-100 360.9
Csa03g04481 . 10 248 14-3-3 family AT3G02520 74.9 1.6e-99 359.4
Csa05g02506 . 8 256 14-3-3 family AT3G02520 69.3 2.2e-93 339.0
Csa06g02080 . 8 257 14-3-3 family AT3G02520 69.4 6.4e-93 337.4
Csa02g02151 CCT,ECH 1 249 14-3-3 family AT3G02520 69.4 2.4e-92 335.5
Csa07g00466 . 1 238 14-3-3 family AT3G02520 71.3 4.6e-91 331.3
Csa03g04446 CCT,ECH 1 239 14-3-3 family AT3G02520 70.5 6.2e-88 320.9
Csa02g02225 . 9 246 14-3-3 family AT5G65430 88.7 9.0e-116 413.3
Csa03g04481 . 9 246 14-3-3 family AT5G65430 84.5 1.0e-111 399.8
Csa04g00880 . 7 241 14-3-3 family AT5G65430 79.7 4.6e-104 374.4
Csa03g04457 CCT 1 242 14-3-3 family AT5G65430 79.4 7.9e-104 373.6
Csa02g02163 CCT 8 242 14-3-3 family AT5G65430 80.1 1.8e-103 372.5
Csa07g00466 . 1 238 14-3-3 family AT5G65430 69.7 6.5e-90 327.4
Csa05g02506 . 8 239 14-3-3 family AT5G65430 69.8 8.7e-87 317.0
Csa02g02151 CCT,ECH 5 236 14-3-3 family AT5G65430 68.9 1.5e-86 316.2
Csa06g02080 . 8 239 14-3-3 family AT5G65430 67.7 3.1e-84 308.5
Csa03g04446 CCT,ECH 5 236 14-3-3 family AT5G65430 68.5 1.2e-83 306.6
Csa07g00466 . 1 261 14-3-3 family AT2G42590 81.7 6.0e-118 420.6
Csa05g02506 . 6 257 14-3-3 family AT2G42590 75.5 4.9e-104 374.4
Csa02g02151 CCT,ECH 3 242 14-3-3 family AT2G42590 77.5 1.9e-103 372.5
Csa06g02080 . 6 253 14-3-3 family AT2G42590 74.6 4.6e-102 367.9
Csa03g04446 CCT,ECH 3 240 14-3-3 family AT2G42590 75.6 2.1e-99 359.0
Csa04g00880 . 8 248 14-3-3 family AT2G42590 73.0 9.6e-92 333.6
Csa02g02163 CCT 8 248 14-3-3 family AT2G42590 70.1 8.1e-91 330.5
Csa03g04457 CCT 8 245 14-3-3 family AT2G42590 70.2 9.9e-89 323.6
Csa03g04481 . 11 248 14-3-3 family AT2G42590 65.1 2.4e-82 302.4
Csa02g02225 . 11 248 14-3-3 family AT2G42590 64.7 2.0e-81 299.3
Csa02g02151 CCT,ECH 1 241 14-3-3 family AT1G22300 79.7 5.8e-104 374.0
Csa07g00466 . 6 242 14-3-3 family AT1G22300 78.1 6.4e-103 370.5
Csa05g02506 . 5 244 14-3-3 family AT1G22300 77.5 3.2e-102 368.2
Csa06g02080 . 5 244 14-3-3 family AT1G22300 76.3 3.5e-101 364.8
Csa03g04446 CCT,ECH 1 240 14-3-3 family AT1G22300 75.8 4.0e-97 351.3
Csa04g00880 . 5 246 14-3-3 family AT1G22300 70.7 3.3e-91 331.6
Csa02g02163 CCT 8 246 14-3-3 family AT1G22300 70.3 4.0e-89 324.7
Csa03g04457 CCT 8 245 14-3-3 family AT1G22300 69.7 2.6e-88 322.0
Csa03g04481 . 11 248 14-3-3 family AT1G22300 65.1 2.6e-80 295.4
Csa02g02225 . 11 248 14-3-3 family AT1G22300 64.7 1.7e-79 292.7
Csa02g02151 CCT,ECH 1 245 14-3-3 family AT1G34760 81.2 1.1e-105 379.8
Csa07g00466 . 6 246 14-3-3 family AT1G34760 80.5 4.0e-105 377.9
Csa05g02506 . 5 245 14-3-3 family AT1G34760 81.3 6.9e-105 377.1
Csa06g02080 . 5 247 14-3-3 family AT1G34760 79.4 1.3e-103 372.9
Csa03g04446 CCT,ECH 1 243 14-3-3 family AT1G34760 76.5 1.4e-97 352.8
Csa04g00880 . 5 250 14-3-3 family AT1G34760 71.1 1.1e-89 326.6
Csa02g02163 CCT 8 245 14-3-3 family AT1G34760 72.3 4.1e-89 324.7
Csa03g04457 CCT 8 249 14-3-3 family AT1G34760 70.2 2.0e-88 322.4
Csa03g04481 . 11 247 14-3-3 family AT1G34760 63.7 2.9e-79 292.0
Csa02g02225 . 11 247 14-3-3 family AT1G34760 64.1 4.2e-78 288.1
Csa05g02506 . 2 263 14-3-3 family AT1G26480 84.7 5.2e-119 424.1
Csa06g02080 . 2 254 14-3-3 family AT1G26480 85.8 2.6e-118 421.8
Csa07g00466 . 3 242 14-3-3 family AT1G26480 80.0 4.6e-107 384.4
Csa02g02151 CCT,ECH 2 249 14-3-3 family AT1G26480 76.6 3.6e-104 374.8
Csa03g04446 CCT,ECH 3 244 14-3-3 family AT1G26480 75.6 6.7e-98 354.0
Csa02g02163 CCT 8 260 14-3-3 family AT1G26480 72.0 3.8e-93 338.2
Csa03g04457 CCT 8 247 14-3-3 family AT1G26480 73.8 4.2e-92 334.7
Csa04g00880 . 2 256 14-3-3 family AT1G26480 71.6 9.3e-92 333.6
Csa03g04481 . 11 244 14-3-3 family AT1G26480 67.1 6.7e-82 300.8
Csa02g02225 . 11 244 14-3-3 family AT1G26480 66.2 1.3e-80 296.6
Csa05g02506 . 5 237 14-3-3 family AT1G78220 52.6 1.5e-64 243.0
Csa02g02151 CCT,ECH 1 234 14-3-3 family AT1G78220 51.1 2.9e-63 238.8
Csa07g00466 . 6 236 14-3-3 family AT1G78220 50.9 3.7e-63 238.4
Csa06g02080 . 5 237 14-3-3 family AT1G78220 50.9 4.9e-63 238.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000486 6 4 5 6 5 2 5 3 3 3 3 3 6 3 2 6 3 6 6 3 3 3 3 3 3 3 3 6 4 0 114