Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02171 ATGGCCTACTCCTTCAGAGTTCCATTTTTGGTCTTAGCCACCATTGTCATTTCTATGGCTATTCCAACCTTCGCCGTGGTTTACACCGTTGGAGACGCTGCCGGTTGGTCCACCGGTGTCGATTACAGCTCTTGGACTTCTGGAAAGACCTTCGTTGTAGGCGACACCCTAATGTTCAATTATGGAGGTGGGCACACTGTGGATGAAGTGAGTGGGAGTGACTATAACTCATGCACGGCTAGCAATTCCATTAGTAGCGATAGCACTGGCGCTACAACCGTCACTCTCAACAAGCCTGGTACTCATTACTTCATTTGTGGTGCACTTGGTCATTGTAGCAACGGCATGAAGCTCGCGGTCACGGTTGCAGATTCTGGAGCTCCCTCCTCTACAATCCCAGCTCCATCCCCCACCGAAGATGGAGTGTCGCCGTCTAAAGCACCATCATCTCTTGGAGGAGCTTCTCCAACGACAATGCCATCCATTGATTTTGCTCCCAAAGATACCGACTCCTCATTGGTTAACTCCCCAACGTCGTCCAAGGTTCCCGTCGAGGCATCTTCCGCTACGATGGTCAGCACTTGGGCAGCCGCTGCAGCCGCTGGGGTCTTGTTTGTTGTTGCTTAG 627 51.83 MAYSFRVPFLVLATIVISMAIPTFAVVYTVGDAAGWSTGVDYSSWTSGKTFVVGDTLMFNYGGGHTVDEVSGSDYNSCTASNSISSDSTGATTVTLNKPGTHYFICGALGHCSNGMKLAVTVADSGAPSSTIPAPSPTEDGVSPSKAPSSLGGASPTTMPSIDFAPKDTDSSLVNSPTSSKVPVEASSATMVSTWAAAAAAGVLFVVA* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19559517 19560682 - CsaV3_2G029900.1 Csa02g02171 520228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02171 208 PANTHER BLUE COPPER PROTEIN-LIKE 15 144 - -
Csa02g02171 208 ProSiteProfiles Phytocyanin domain profile. 26 124 IPR003245 GO:0009055
Csa02g02171 208 Pfam Plastocyanin-like domain 36 116 IPR003245 GO:0009055
Csa02g02171 208 SUPERFAMILY Cupredoxins 25 122 IPR008972 -
Csa02g02171 208 CDD Phytocyanin 26 122 - -
Csa02g02171 208 MobiDBLite consensus disorder prediction 127 185 - -
Csa02g02171 208 Gene3D - 24 127 IPR008972 -
Csa02g02171 208 PANTHER BLUE COPPER PROTEIN 15 144 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02171 - - - csv:101219044 365.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02171 Csa03g04469 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02171 Csa-Chr2:19559517 Csa05g00354 Csa-Chr5:2254983 4.87E-32 dispersed
Csa06g02492 Csa-Chr6:22197775 Csa02g02171 Csa-Chr2:19559517 1.22E-12 dispersed
Csa01g00508 Csa-Chr1:3392877 Csa02g02171 Csa-Chr2:19559517 6.22E-26 transposed
Csa01g01614 Csa-Chr1:11762019 Csa02g02171 Csa-Chr2:19559517 1.03E-15 transposed
Csa02g02707 Csa-Chr2:23586549 Csa02g02171 Csa-Chr2:19559517 7.84E-33 transposed
Csa03g00726 Csa-Chr3:6494975 Csa02g02171 Csa-Chr2:19559517 2.75E-34 transposed
Csa05g00492 Csa-Chr5:3183923 Csa02g02171 Csa-Chr2:19559517 4.24E-25 transposed
Csa06g02339 Csa-Chr6:20969507 Csa02g02171 Csa-Chr2:19559517 4.07E-31 transposed
Csa02g02171 Csa-Chr2:19559517 Csa03g04469 Csa-Chr3:38956985 7.47E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g453 . Blo12g00715 . Bda03g00478 Bpe02g00124 Bpe04g00433 Bma04g00446 Bma01g02602 Cmo05g00540 . Cma01g01628 Cma09g00579 . . . Cpe06g00440 . Bhi04g00926 . . . Hepe10g0421 . Lcy13g1473 Cla08g01130 Cam08g1587 Cec08g1157 Cco08g1283 Clacu08g1287 . Cre08g1069 . . Cone17ag1202 Cone20ag0526 Lsi04g02258 Csa03g04469 Chy04g00232 Cme03g01843 . . Bda11g00779 Bda13g01385 Bpe02g01525 Bpe14g00466 Bma01g00937 . Sed05g1577 Cmo01g01674 Cmo09g00563 . Cma05g00513 Car05g00463 Car09g00507 . Cpe02g00356 Bhi09g02470 Tan01g3819 Cmetu04g3088 . Hepe01g2150 . . Cla11g01403 Cam11g1460 Cec11g1487 Cco11g1484 Clacu11g1621 Cmu11g1438 Cre11g1857 Lsi08g00986 Csa02g02171 Chy03g01346 Cme04g00259
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002164 3 2 2 2 3 1 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 1 3 3 1 63