Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02174 | ATGGCGGTTACACTCAGCAGAAAGCTTTTTCCAGTTGCCACTGGAACTGCCCTACCAACTACTAATTGTTCCGCCTGCCCTTACGACTGCCCTTACGACTGTTACGGTTTTCCCGATCTCTACTTCTCGCCCCCGCCACCACCCCCTCCTCTTTCCGACCACCAAAAACAGCTTCCAACTACGATCATCATCCTAATTCTCTTCATCGCCTTTTTCGTAGCTTTTACTTTCTACATCATCGTCGTAAAATGTCGATCTTGGTACTCTGGCTCCGCCAACGAAGGAGCAGAGGCGTTGCAATCGGACGGCGGAGAAGGAGAGTTTATGAACGAGAATCAAGTGGATCATCCAATTTGGTTCATCACCACTGCTGGACTTCAACAATCAGTCATCAATTCCATTACGGTTTGCAAGTACAAGAAGAGCGAAGGTTTAATTGAAGGAACGGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGTTGTTACCAAAATGTAGCCACGCGTTTCATATTGGTTGTGTTGATACTTGGCTAAGAACGCACACCACTTGCCCTCTCTGTCGAGCACATATTCTTACTGATTTCACCACCCCCAACTCCGTCAGGCCACCAAATATAGGTCCATTGAATCAAAACGAAGGTAATTTGGGTTTAAATGAAGACACCCAGATGGAGAATGAGAATACTAACCGGGAAGCTGTAAGGGAAAATGAAGGTGGCGGTGTTTCTATTTCTAGTGAGAGCTCTGAAAACAGAGGAGATGCTGTTGATGAACAAAGAGAAGTTGAGGAGATAGTTCAAAAAGAAGGGAATTTTGAATCTGATGATTCAAAAGTGGAAGGAAATGAAAGTATGAGGAACGATAATCAAATGAATTCATCTTCAACAACAACAACAACAACAACATGA | 924 | 43.83 | MAVTLSRKLFPVATGTALPTTNCSACPYDCPYDCYGFPDLYFSPPPPPPPLSDHQKQLPTTIIILILFIAFFVAFTFYIIVVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGNLGLNEDTQMENENTNREAVRENEGGGVSISSESSENRGDAVDEQREVEEIVQKEGNFESDDSKVEGNESMRNDNQMNSSSTTTTTTT* | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 19570529 | 19572076 | + | CsaV3_2G029930.1 | Csa02g02174 | 520231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02174 | 307 | SMART | ring_2 | 151 | 192 | IPR001841 | - | |
Csa02g02174 | 307 | SUPERFAMILY | RING/U-box | 141 | 202 | - | - | |
Csa02g02174 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 151 | 193 | IPR001841 | - | |
Csa02g02174 | 307 | MobiDBLite | consensus disorder prediction | 202 | 307 | - | - | |
Csa02g02174 | 307 | MobiDBLite | consensus disorder prediction | 256 | 288 | - | - | |
Csa02g02174 | 307 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 9 | 301 | IPR044675 | - | |
Csa02g02174 | 307 | SMART | FANCL_C_2 | 147 | 201 | - | - | |
Csa02g02174 | 307 | MobiDBLite | consensus disorder prediction | 289 | 307 | - | - | |
Csa02g02174 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 199 | IPR013083 | - | |
Csa02g02174 | 307 | CDD | RING-H2_PA-TM-RING | 150 | 193 | - | - | |
Csa02g02174 | 307 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 9 | 301 | - | - | |
Csa02g02174 | 307 | MobiDBLite | consensus disorder prediction | 202 | 229 | - | - | |
Csa02g02174 | 307 | Pfam | Ring finger domain | 150 | 193 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02174 | Csa-Chr2:19570529 | Csa03g04600 | Csa-Chr3:40005483 | 1.09E-48 | dispersed | |
Csa02g00883 | Csa-Chr2:8237146 | Csa02g02174 | Csa-Chr2:19570529 | 1.01E-34 | transposed | |
Csa03g01059 | Csa-Chr3:8460031 | Csa02g02174 | Csa-Chr2:19570529 | 5.83E-38 | transposed | |
Csa06g03328 | Csa-Chr6:27825517 | Csa02g02174 | Csa-Chr2:19570529 | 4.43E-13 | transposed | |
Csa07g00697 | Csa-Chr7:4987024 | Csa02g02174 | Csa-Chr2:19570529 | 2.82E-11 | transposed | |
Csa02g02174 | Csa-Chr2:19570529 | Csa06g03136 | Csa-Chr6:26772192 | 5.99E-43 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02174 | - | - | csv:101209492 | 568.155 |