Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02174 ATGGCGGTTACACTCAGCAGAAAGCTTTTTCCAGTTGCCACTGGAACTGCCCTACCAACTACTAATTGTTCCGCCTGCCCTTACGACTGCCCTTACGACTGTTACGGTTTTCCCGATCTCTACTTCTCGCCCCCGCCACCACCCCCTCCTCTTTCCGACCACCAAAAACAGCTTCCAACTACGATCATCATCCTAATTCTCTTCATCGCCTTTTTCGTAGCTTTTACTTTCTACATCATCGTCGTAAAATGTCGATCTTGGTACTCTGGCTCCGCCAACGAAGGAGCAGAGGCGTTGCAATCGGACGGCGGAGAAGGAGAGTTTATGAACGAGAATCAAGTGGATCATCCAATTTGGTTCATCACCACTGCTGGACTTCAACAATCAGTCATCAATTCCATTACGGTTTGCAAGTACAAGAAGAGCGAAGGTTTAATTGAAGGAACGGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGTTGTTACCAAAATGTAGCCACGCGTTTCATATTGGTTGTGTTGATACTTGGCTAAGAACGCACACCACTTGCCCTCTCTGTCGAGCACATATTCTTACTGATTTCACCACCCCCAACTCCGTCAGGCCACCAAATATAGGTCCATTGAATCAAAACGAAGGTAATTTGGGTTTAAATGAAGACACCCAGATGGAGAATGAGAATACTAACCGGGAAGCTGTAAGGGAAAATGAAGGTGGCGGTGTTTCTATTTCTAGTGAGAGCTCTGAAAACAGAGGAGATGCTGTTGATGAACAAAGAGAAGTTGAGGAGATAGTTCAAAAAGAAGGGAATTTTGAATCTGATGATTCAAAAGTGGAAGGAAATGAAAGTATGAGGAACGATAATCAAATGAATTCATCTTCAACAACAACAACAACAACAACATGA 924 43.83 MAVTLSRKLFPVATGTALPTTNCSACPYDCPYDCYGFPDLYFSPPPPPPPLSDHQKQLPTTIIILILFIAFFVAFTFYIIVVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGNLGLNEDTQMENENTNREAVRENEGGGVSISSESSENRGDAVDEQREVEEIVQKEGNFESDDSKVEGNESMRNDNQMNSSSTTTTTTT* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19570529 19572076 + CsaV3_2G029930.1 Csa02g02174 520231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02174 307 SMART ring_2 151 192 IPR001841 -
Csa02g02174 307 SUPERFAMILY RING/U-box 141 202 - -
Csa02g02174 307 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Csa02g02174 307 MobiDBLite consensus disorder prediction 202 307 - -
Csa02g02174 307 MobiDBLite consensus disorder prediction 256 288 - -
Csa02g02174 307 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 301 IPR044675 -
Csa02g02174 307 SMART FANCL_C_2 147 201 - -
Csa02g02174 307 MobiDBLite consensus disorder prediction 289 307 - -
Csa02g02174 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Csa02g02174 307 CDD RING-H2_PA-TM-RING 150 193 - -
Csa02g02174 307 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 301 - -
Csa02g02174 307 MobiDBLite consensus disorder prediction 202 229 - -
Csa02g02174 307 Pfam Ring finger domain 150 193 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02174 Csa-Chr2:19570529 Csa03g04600 Csa-Chr3:40005483 1.09E-48 dispersed
Csa02g00883 Csa-Chr2:8237146 Csa02g02174 Csa-Chr2:19570529 1.01E-34 transposed
Csa03g01059 Csa-Chr3:8460031 Csa02g02174 Csa-Chr2:19570529 5.83E-38 transposed
Csa06g03328 Csa-Chr6:27825517 Csa02g02174 Csa-Chr2:19570529 4.43E-13 transposed
Csa07g00697 Csa-Chr7:4987024 Csa02g02174 Csa-Chr2:19570529 2.82E-11 transposed
Csa02g02174 Csa-Chr2:19570529 Csa06g03136 Csa-Chr6:26772192 5.99E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02174 - - csv:101209492 568.155