Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02175 ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTCAGTTATGTTTGCAGGGATTTCAGTTCTTACGCCGGAGGACCACCTTGGGGTACCTACGACTATGCCTTTCAATTTGAAGAACAAAAAGCTTTTCTTGGACTCATTGAAAACCAAACACAGGACCAAAAATGGGAGCCTTCACCTGACGAATCTTCAATCAATCACCCACTCCCCGGAGGAGGATCTCTTTACCCGCCGCTGGAGCTAGAGCCAACACCACCACCACCGCCACCAACCACAGGAAGAAGAAAACGACGGCGGACTCGTAGCACGAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCCGTGGAGCGTAATCGGCGGAAGCAAATGAATGAATATCTTGCCGTTCTCCGATCATTAATGCCATCTTCTTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTACAATTCATTAAAGTCCATAAAGAACAAACTGATACCTCCCCTTTTGCCGATTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACTCAGTCCAAGAACAACAACTCGCCCCATGACTCATCCATTGCTCACACTCAATGGCCGGCCGGAGACATTGAAGTCACCATGGTCGATACTCATGCCAACCTTAAAATACTTTCCCAAAAACGACCCAGGCAGCTCCTCAAAATGGTGGCTGGATTTCAAAGCTTGAGACTCACTATTCTTCATCTCAATGTCACTACTTCAGATCAAATGGTTCTGTATTCTCTAAGTATTAAGGTTGAAGAAGGATGTCAGTTGAATACAGTGGATGAAATTGCTGCAGCTGTGAATCAAATCCTACTTTCAATTCAAGAGGAAGCTGTTTATAGCTGA 924 44.26 MMALETVVYPQDTFSYVCRDFSSYAGGPPWGTYDYAFQFEEQKAFLGLIENQTQDQKWEPSPDESSINHPLPGGGSLYPPLELEPTPPPPPPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTDTSPFADFFSFPQYSTRATTQSKNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVYS* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19575197 19577442 - CsaV3_2G029940.1 Csa02g02175 520232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02175 307 MobiDBLite consensus disorder prediction 53 114 - -
Csa02g02175 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 164 IPR011598 GO:0046983
Csa02g02175 307 SMART finulus 119 170 IPR011598 GO:0046983
Csa02g02175 307 Gene3D - 106 178 IPR036638 GO:0046983
Csa02g02175 307 PANTHER MAX DIMERIZATION, MAD 2 305 - -
Csa02g02175 307 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 2 305 - -
Csa02g02175 307 Pfam Helix-loop-helix DNA-binding domain 114 165 IPR011598 GO:0046983
Csa02g02175 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 179 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00399 Csa-Chr2:2751170 Csa02g02175 Csa-Chr2:19575197 6.10E-83 dispersed
Csa02g02175 Csa-Chr2:19575197 Csa03g04599 Csa-Chr3:40003473 2.15E-70 dispersed
Csa02g02175 Csa-Chr2:19575197 Csa03g00171 Csa-Chr3:1295970 4.61E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31011 PF00010 HLH 4.20E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02175 - - csv:101218813 551.592