Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02178 ATGGGGAGTGTTTCCGATCAAACCCACCATTTCTTATCCAAATTTTGGGTTGAAACTCAGAAGCTATGGCTAATCGTTGGCCCTTCCATTTTCAGCCGTGTCTCCTCCTTCACCATGAACATCATCACTCAAGCTTTCTCTGGCCGTTTAGGTGACGTTCAACTTGCTTCCATTTCCATCGCCAACACTGTAATTGTCGGTTTCAACTTCGGCCTCTTATTGGGGATGGCTAGTGCATTAGAGACACTATGTGGACAAGCATATGGAGCAAGGAGATATCATATGTTAGGAATATACTTGCAACGATCGTGGATAGTGCTTTCCCTTTGTTGTTTCTTGTTACTTCCTTTTTATTTTTACGCCACGCCAGTTTTGAAACTGCTTGGCCAAGACGATGATGTAGCAGAGCAATCAGGGGTAGTAGCGATTTGGTTAATACCACTTCATTTCAGCTTTGCTTTTCAGTTTCCATTACAGAGGTTTTTGCAATCTCAATTGAAAACCCAAGTCATTGCTTGTGTTTCTTTTATAGGATTAGCTACGAATATTTTAGCTTGTTGGCTTTTTATATACGTTTGGGAATTTGGGGTAATTGGGGCAGCCATAGCTTTAGATATAGCTTGGTGGGTTTTGGTTTTTGGATTGTATACATATACTGTTGGTGGTTGGTGCCCTTTAACTTGGACTGGCTTCTCTAGTCAAGCCTTCCATGGCCTCTGGGATTTCACTAAGCTCTCCATTTCTGCTGGCCTCATGCTCTGCTCGGAGAATTGGTATTACAGGATACTAGTGCTGATGACAGGGAATCTAAAGAATGCTACTATAGCTGTAGATGCATTGTCCATATGCATGAGCATCAATGGATGGGAAATGATGATTCCTTTAGCATTCTTTGCTGGCGTTGGAGTTAGAGTGGCAAACGAGCTTGGTGCTGGGAATGGGAATGCAGCCAAATTTGCTACAATTGTATCAGTTGTGCAATCAATAGTGATTGGAGCTGTGATATGTGTTGTTATAATGATATTTCATGATAAGATAGCTTTTATCTTCACAGACAGCAGTAGTGTTGTGGGAGCTGTTGATACACTCTCAAGCTTGCTAGCAGTCACCATTCTCTTAAACAGTATCCAACCCATTCTTTCAGGTGTGGCTGTTGGATCAGGTTGGCAATCTAAGGTTGCATATATAAATCTTGGCTGCTATTATCTTATTGGTCTCCCTCTTGGTTTCATTATGGAATGGGTTTTCAACTCTGGTGTGCTGGGGATTTGGGGAGGAATGATATTTGGTGGCACTGCAGTTCAAACCATAATATTATTGATAATCACAATGAGAACTAATTGGGAAGTAGAGGCCCAGAAAGCACAAGAACATGTGGAACAATGGTCCAGTCCTCAAGAAATCGAGAAGCCTCTTTTAGCCTAA 1425 41.82 MGSVSDQTHHFLSKFWVETQKLWLIVGPSIFSRVSSFTMNIITQAFSGRLGDVQLASISIANTVIVGFNFGLLLGMASALETLCGQAYGARRYHMLGIYLQRSWIVLSLCCFLLLPFYFYATPVLKLLGQDDDVAEQSGVVAIWLIPLHFSFAFQFPLQRFLQSQLKTQVIACVSFIGLATNILACWLFIYVWEFGVIGAAIALDIAWWVLVFGLYTYTVGGWCPLTWTGFSSQAFHGLWDFTKLSISAGLMLCSENWYYRILVLMTGNLKNATIAVDALSICMSINGWEMMIPLAFFAGVGVRVANELGAGNGNAAKFATIVSVVQSIVIGAVICVVIMIFHDKIAFIFTDSSSVVGAVDTLSSLLAVTILLNSIQPILSGVAVGSGWQSKVAYINLGCYYLIGLPLGFIMEWVFNSGVLGIWGGMIFGGTAVQTIILLIITMRTNWEVEAQKAQEHVEQWSSPQEIEKPLLA* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19600315 19603303 - CsaV3_2G029970.1 Csa02g02178 520235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02178 474 CDD MATE_eukaryotic 18 454 IPR045069 GO:0042910|GO:1990961
Csa02g02178 474 PANTHER MULTIDRUG RESISTANCE PROTEIN 6 459 - -
Csa02g02178 474 TIGRFAM matE: MATE efflux family protein 28 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa02g02178 474 Pfam MatE 251 411 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa02g02178 474 Pfam MatE 28 188 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa02g02178 474 PANTHER PROTEIN DETOXIFICATION 6 459 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02178 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101218581 941.799
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02178 Csa-Chr2:19600315 Csa04g00912 Csa-Chr4:6655880 0 dispersed
Csa01g00775 Csa-Chr1:4921986 Csa02g02178 Csa-Chr2:19600315 1.01E-145 transposed
Csa01g01151 Csa-Chr1:7140633 Csa02g02178 Csa-Chr2:19600315 1.16E-131 transposed
Csa05g00115 Csa-Chr5:583100 Csa02g02178 Csa-Chr2:19600315 1.75E-140 transposed
Csa05g02300 Csa-Chr5:25510551 Csa02g02178 Csa-Chr2:19600315 2.41E-149 transposed
Csa06g00068 Csa-Chr6:448921 Csa02g02178 Csa-Chr2:19600315 2.66E-143 transposed
Csa02g02178 Csa-Chr2:19600315 Csa06g03131 Csa-Chr6:26739918 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129