Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02181 ATGAAACGCCTCGGCTGGCTAGGGCTGTGCCGGCGGCAATTACTTTCATCTGAAGGCGTAGGGCCGTCCATTGACTTACGACTCTCGCTCGGAAAAGTTCCATCATTACGCCAGTTTTTTACATGTGCTAGAGCGTTGCAAGCATTTCCTTCTGCCGTAGGGAACGGTCCTGACTTTGCCACAGCATTTCCGGGGAGTAGACATTTCATACATAGCACAGGATCATGTTGTTCTATCGAACGAGATTACTATGAAATTCTGGGGGTTCAACACAATGCCAGTCGAGAAGAGATTAAAAAGGCATATCATGCGTTGGCAAAAAAGTACCATCCGGATGCTAATAAAAACAATCCTTCTGCCAAAAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGATCCCAATATGACCAGAGGCATGGTGGAGAGTCTGAGAATGTAGGGTTTGGTGCTGGTGATGCGGAGGGGTTTAGCTATACTTATCGTACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCCGAGATCTTTGAACATGAGACCGGTCGTCTTCCCTCAGATATTCAGGTTGACCTGCTGTTATCTTTTGCTGAAGCTGCAAAAGGATGCACTAAGGATTTGTCCTTTGATGCTCTGGTTCCCTGTGATTCTTGCTATGGGCGTGGCTATCCAGTAAATGCATCGAAAAGAAGCTGCCCTACTTGCAGAGGTTTAGGTAGAGTTACTATTCCTCCATTTACATCGACGTGCACCACTTGCCGAGGATCGGGTCAAATCATTGAGGAATCATGTGGGCAATGCAGGGGAATGGGGGTTGTGGAGGGTGTCATGAAGGTTACAGTTACTATACCTGCTGGGGTTGATTCTGGAGATACCATTCGTGTACCAGAAGCTGGTAATAGTGGCGGAAGAGATACTCATCCTGGCAACTTGATCATTAAATTGAAGGTTGCTGAAGATCATGTCTTTAAGAGAGATGGTGTGGATATATATGTGGATTCTAATATCAGCTTTACTCAAGCTATTCTTGGGGGCAAGGTTGAGGTTCCAACATTGTCAGGCAGGATGCAAATAGAAGTACCAAAAGGCGTTCAACCAGGACAGCTATTAACACTGAGAGGGAAAGGATTGCCGAAACATGGATTTTTTGTTGATCGTGGAGATCAGTATGTGCGATTCCGTATTAAATTTCCAACTGAAATAAGTGAACGCCAGCGTGCCATTTTAGAAGAGTTTGCTGAAGAAGAAATAAAGCATGGGATTGGCAACTCAAATGAAGCAAGTTGGTGGCAACGAATTGTTAACCATGTTGGGGAACCTATGTTTGTTCTTGAACTGTCCCTATTAATCTTGATCGCTGTGCTCCTAACTTCAAATGGCTGA 1404 44.52 MKRLGWLGLCRRQLLSSEGVGPSIDLRLSLGKVPSLRQFFTCARALQAFPSAVGNGPDFATAFPGSRHFIHSTGSCCSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQRHGGESENVGFGAGDAEGFSYTYRTHFSDSFQKIFSEIFEHETGRLPSDIQVDLLLSFAEAAKGCTKDLSFDALVPCDSCYGRGYPVNASKRSCPTCRGLGRVTIPPFTSTCTTCRGSGQIIEESCGQCRGMGVVEGVMKVTVTIPAGVDSGDTIRVPEAGNSGGRDTHPGNLIIKLKVAEDHVFKRDGVDIYVDSNISFTQAILGGKVEVPTLSGRMQIEVPKGVQPGQLLTLRGKGLPKHGFFVDRGDQYVRFRIKFPTEISERQRAILEEFAEEEIKHGIGNSNEASWWQRIVNHVGEPMFVLELSLLILIAVLLTSNG* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19628314 19639597 - CsaV3_2G030000.1 Csa02g02181 520238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02181 467 CDD DnaJ 82 136 IPR001623 -
Csa02g02181 467 Gene3D - 325 429 - -
Csa02g02181 467 Hamap Chaperone protein DnaJ [dnaJ]. 79 443 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Csa02g02181 467 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Csa02g02181 467 PRINTS DnaJ domain signature 84 102 IPR001623 -
Csa02g02181 467 PRINTS DnaJ domain signature 102 117 IPR001623 -
Csa02g02181 467 PRINTS DnaJ domain signature 119 139 IPR001623 -
Csa02g02181 467 PRINTS DnaJ domain signature 139 158 IPR001623 -
Csa02g02181 467 CDD DnaJ_C 193 408 - -
Csa02g02181 467 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 325 IPR008971 GO:0006457|GO:0051082
Csa02g02181 467 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Csa02g02181 467 SUPERFAMILY Chaperone J-domain 81 172 IPR036869 -
Csa02g02181 467 Gene3D - 252 286 - -
Csa02g02181 467 Gene3D - 218 251 - -
Csa02g02181 467 MobiDBLite consensus disorder prediction 135 154 - -
Csa02g02181 467 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 416 IPR008971 GO:0006457|GO:0051082
Csa02g02181 467 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 280 IPR036410 -
Csa02g02181 467 Pfam DnaJ domain 82 144 IPR001623 -
Csa02g02181 467 Gene3D - 193 322 - -
Csa02g02181 467 ProSiteProfiles Zinc finger CR-type profile. 209 283 IPR001305 GO:0031072|GO:0051082
Csa02g02181 467 SMART dnaj_3 81 139 IPR001623 -
Csa02g02181 467 CDD DnaJ_zf 222 278 IPR001305 GO:0031072|GO:0051082
Csa02g02181 467 Pfam DnaJ central domain 222 278 IPR001305 GO:0031072|GO:0051082
Csa02g02181 467 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 34 444 - -
Csa02g02181 467 Pfam DnaJ C terminal domain 195 405 IPR002939 -
Csa02g02181 467 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 444 - -
Csa02g02181 467 Gene3D DnaJ domain 79 192 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02181 - - - csv:101208756 926.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02181 Csa-Chr2:19628314 Csa05g02699 Csa-Chr5:27819309 1.11E-35 dispersed
Csa06g03329 Csa-Chr6:27834870 Csa02g02181 Csa-Chr2:19628314 6.60E-12 dispersed
Csa01g00496 Csa-Chr1:3292319 Csa02g02181 Csa-Chr2:19628314 1.28E-27 transposed
Csa03g04020 Csa-Chr3:35110892 Csa02g02181 Csa-Chr2:19628314 3.77E-14 transposed
Csa04g00197 Csa-Chr4:1150594 Csa02g02181 Csa-Chr2:19628314 8.51E-66 transposed
Csa04g00885 Csa-Chr4:6370429 Csa02g02181 Csa-Chr2:19628314 9.42E-69 transposed
Csa06g02999 Csa-Chr6:25870394 Csa02g02181 Csa-Chr2:19628314 4.45E-11 transposed
Csa07g00535 Csa-Chr7:3934701 Csa02g02181 Csa-Chr2:19628314 1.28E-12 transposed
Csa07g02043 Csa-Chr7:19800188 Csa02g02181 Csa-Chr2:19628314 1.08E-89 transposed
Csa02g02181 Csa-Chr2:19628314 Csa03g04483 Csa-Chr3:39064748 2.00E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30