Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02187 ATGGAATTCGACGAGGAGAACGACGAGGAAATAATGGATGAGATGCCAATCGCCACTCACCACTACGACTCGCTCACTAACTCAGCTTCAACTCGGCCAAAACCTGGTGAAGGTGCTTCAACAGCGAGAAAAGCCAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGACGCACTGAAATGCGCCGCCTGTAACTGCCACCGAAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCAACAACAACAACAACAAATTTGTCCATATCGTGGGCCCACGCCACACCCATCTGCTTACGTGTACATGAGGGGGGCCCCAGTTCAACAAAGGGCGTTGGCTTTGCCGGCAGCAGCCGGGGGGAGGGAAGAGGACGACACGTCGAATCCGAGTAGTAGCGGCGGCGGCGGCGGAAGTGGAAGTGGGTTGTTGTTGAAGAAGAGATTTAGGACGAAGTTTAGTTCAGAGCAAAAGGAGAAAATGTTAGAGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGACGAAGCTGATGTCGAACGATTCTGTATGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTAAAATGGAAGTATATGGAAGTAGGTTTAATTATTTAA 711 49.37 MEFDEENDEEIMDEMPIATHHYDSLTNSASTRPKPGEGASTARKASSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQQQICPYRGPTPHPSAYVYMRGAPVQQRALALPAAAGGREEDDTSNPSSSGGGGGSGSGLLLKKRFRTKFSSEQKEKMLEFAEKVGWTIQKHDEADVERFCMETGVRRQVLKVKWKYMEVGLII* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19666125 19667660 - CsaV3_2G030060.1 Csa02g02187 520244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02187 236 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
Csa02g02187 236 Gene3D - 158 229 - -
Csa02g02187 236 MobiDBLite consensus disorder prediction 21 35 - -
Csa02g02187 236 MobiDBLite consensus disorder prediction 143 172 - -
Csa02g02187 236 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Csa02g02187 236 SUPERFAMILY Homeodomain-like 161 225 IPR009057 -
Csa02g02187 236 MobiDBLite consensus disorder prediction 1 43 - -
Csa02g02187 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 225 - -
Csa02g02187 236 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 175 225 IPR006455 -
Csa02g02187 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 31 225 - -
Csa02g02187 236 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02187 - - - csv:101216697 415.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00549 Csa-Chr1:3579914 Csa02g02187 Csa-Chr2:19666125 5.21E-24 dispersed
Csa02g02187 Csa-Chr2:19666125 Csa06g03243 Csa-Chr6:27375407 3.09E-53 dispersed
Csa02g02187 Csa-Chr2:19666125 Csa06g03128 Csa-Chr6:26710896 1.21E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31012 PF04770 ZF-HD_dimer 2.00E-30 No_clan Csa TF