Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02188 ATGGATTTCTTCTTTTCACCCTGTACTTCTGACTCTGCCATTTCCATCTGCGGCGCCTCCGATTCTCTTTCCTCCCACCTCAAAATCAAACCCAGAAAGCCTTTTCAAATCACACAATTTTCTTATTCCGATCTTCTCTCTTCCACTAATTCATTCTCTCCCGACTGTTTTTTAGGCAAAGGCAGCCACGGCGCTGTTTACAAGGCCCTTCTCCACGGCGGTAAGCTCGTCGCCGCCGTTAAACGTACCAAATTCACAAACCCATCTCCTAGTTTTCACTACAACTCCTGCCAATTGCCCAATCACACTCCTGCCGAAAACGAAATCGAGATCCTTTCCCAGCTTCGACACCCCAGAATCGTGAATCTTATTGGGTTTTGTGTCAATTCAAAGGACGAGAAATTGCTTGTCGTTGAGTTCATGCCCAATGGCTCTCTTTACGATCTGCTCCATTCCCAATCTAGACCGCCCGGTTGGACTCGCCGACTCCGGTTTGCGTTACAGGTCGCAAAAGCGGTTCGAACTCTTCACACGTCCAACCCGCCGGTTATTCATAGAGATATTAAGTCGTCGAACGTTTTGATCGACGGTAACTTCAACGCGCGTCTTGGGGATTTTGGTTTAGCGTTGAGAGGACACGTGGAAGATGTGCGAGTGAGATGTACGCCCCCGGCTGGCACGTTGGGTTATCTTGATCCCGGATACCTCGCACCGGCTGATTTGAGTGTTAAGAGCGACGTTTTTAGTTTTGGGATTTTGCTTTTGGAGATCCTCAGTGGTCGAAATGCTATCGATGTTCACCACAGTCCCCCGTCGGTCGTTGACTGGGCCTTGCCAATGATCAAACATAGTAATTTCGATGGCCTGTGCGACCCACGAATCGGGTCTCCCACTGACCCGGCGGTGATTCGTTGTTTGGCAGTTCTGGCCGCTAACTGTGTCCGGGTTGCCGTGCAGAAGCGGCCGGATATGGCGGAGGTGGTGGAGTGTTTGAAGGCAGCTAAGAAGAAGTTGCACGTGCCACCGATATGGAACAATTTAAGGCCGCGGAAACGACATGTGGAGAATCTACAGCCGTTGATTTCAAACTTTGATGAACCCGACGGCTGTGATGAGCCGATGAAGGTTTGCCGGATGGGTAGCCGGAGGAATCGAAAAGTGTCGAGTGTTTCGAGTACAGAGTATAAAATTAAGACGAATGGGCGAGTGGTTAGATCGAGATCAATGGGTTCGGTGGAAATTAATTCTAATGTCGGCGGAAATTATTACTCTTCGTTAAGTGGCCGACGTAAACACAGCGGCGTCGCAATGAAAATTCCGACTATGAAACTTAGTAAATCGAGGTCGGTGGGAGTGTCAGAGAATCCAAAGTTTGTTGAATGTTGTAATCGGAGGGCGGGAGCGTTTTTGCCGGAAATTGAAATGTCGAAGTTGATGATTGATTGTGAATCTAAATCTGAGAAACCGTTGTTGCAAAATTAA 1482 48.52 MDFFFSPCTSDSAISICGASDSLSSHLKIKPRKPFQITQFSYSDLLSSTNSFSPDCFLGKGSHGAVYKALLHGGKLVAAVKRTKFTNPSPSFHYNSCQLPNHTPAENEIEILSQLRHPRIVNLIGFCVNSKDEKLLVVEFMPNGSLYDLLHSQSRPPGWTRRLRFALQVAKAVRTLHTSNPPVIHRDIKSSNVLIDGNFNARLGDFGLALRGHVEDVRVRCTPPAGTLGYLDPGYLAPADLSVKSDVFSFGILLLEILSGRNAIDVHHSPPSVVDWALPMIKHSNFDGLCDPRIGSPTDPAVIRCLAVLAANCVRVAVQKRPDMAEVVECLKAAKKKLHVPPIWNNLRPRKRHVENLQPLISNFDEPDGCDEPMKVCRMGSRRNRKVSSVSSTEYKIKTNGRVVRSRSMGSVEINSNVGGNYYSSLSGRRKHSGVAMKIPTMKLSKSRSVGVSENPKFVECCNRRAGAFLPEIEMSKLMIDCESKSEKPLLQN* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19675209 19677195 - CsaV3_2G030070.1 Csa02g02188 520245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02188 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Csa02g02188 493 ProSiteProfiles Protein kinase domain profile. 52 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02188 493 SMART serkin_6 52 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02188 493 SUPERFAMILY Protein kinase-like (PK-like) 32 331 IPR011009 -
Csa02g02188 493 PANTHER - 5 465 - -
Csa02g02188 493 Gene3D Phosphorylase Kinase; domain 1 19 140 - -
Csa02g02188 493 Gene3D Transferase(Phosphotransferase) domain 1 141 342 - -
Csa02g02188 493 Pfam Protein kinase domain 58 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02188 493 PANTHER OS01G0750732 PROTEIN 5 465 - -
Csa02g02188 493 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02188 - - - csv:101208276 994.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02188 Csa-Chr2:19675209 Csa03g02882 Csa-Chr3:27557079 8.30E-126 dispersed
Csa02g02188 Csa-Chr2:19675209 Csa05g02420 Csa-Chr5:26216079 1.82E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012718 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77920 PF00069 Pkinase 2.40E-37 CL0016 Csa PK