Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02191 ATGGCTCCTAGTTTTGACCTTGCTGTTTCTAGCCTTTTATGCGCTGAAGAGAATTGCATTTTCGATAATAACGATGGTGATGATGAAACAGTAGTTGAGGAGTTTGTGATGGCTCCTTATTATCTTAGAACTGGTCGGAATCGGAACTCTCGCCGTGGCGGCGGTGGTGATGGGTTGCTGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAGCCCAGCACTTGCCTGTTGATGGGTACCTTGTAAAGTTGCAAAATGGCGAGTTGGACGTTGGAGCGAGAAAAGAGGCCGTCGATTGGATTGAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTAGCTGTAAACTACTTGGATCGATTCCTATCGGCTTACGATCTACCTAAAGGCAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCGGCCAAATTGGAGGAGACTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTCGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTAGGGTGGAGAATGCAAGCAGTTACACCTTTCTCGTTTATTGATCATTACCTCCACAAGATTCACGACGACAAACTCTCTATCAAAATGTCGATCGCTCGGTCTATTCATCTGCTCTTGAACATAATACAAGGGATTGATTTCTTGGAATTCAAACCATCTGAAATTGCAGCAGCTGTGGCAATATCAGTAGCTGGGGAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTATGAAGTGTCTTAAATTAATCAATGGCATGTTAATCTGTGGTGGTGGGTCAATGAAGGACTCGCGAGTGTCGATGTCGGAGCCCCGGAGTCCGAGCGGGGTGTTGGATGTGACATGTTTAAGCTATAAAAGCAATGATACAGCAGTTGGATCATGTGCAAATTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTGGAGCTATAG 1074 44.41 MAPSFDLAVSSLLCAEENCIFDNNDGDDETVVEEFVMAPYYLRTGRNRNSRRGGGGDGLLFMSDECLIEMVEKEAQHLPVDGYLVKLQNGELDVGARKEAVDWIEKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLHKIHDDKLSIKMSIARSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGEAQSVDPERAIPLLIQQLQMERVMKCLKLINGMLICGGGSMKDSRVSMSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19704671 19708523 - CsaV3_2G030100.1 Csa02g02191 520248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02191 357 PANTHER CYCLINS 1 349 IPR039361 -
Csa02g02191 357 SUPERFAMILY Cyclin-like 62 196 IPR036915 -
Csa02g02191 357 SMART Cyclin_C_2 199 323 IPR004367 -
Csa02g02191 357 Pfam Cyclin, N-terminal domain 70 196 IPR006671 -
Csa02g02191 357 MobiDBLite consensus disorder prediction 331 351 - -
Csa02g02191 357 CDD CYCLIN 97 189 IPR013763 -
Csa02g02191 357 SUPERFAMILY Cyclin-like 182 291 IPR036915 -
Csa02g02191 357 Gene3D - 69 283 - -
Csa02g02191 357 Pfam Cyclin, C-terminal domain 199 291 IPR004367 -
Csa02g02191 357 SMART cyclin_7 102 190 IPR013763 -
Csa02g02191 357 Gene3D - 80 197 - -
Csa02g02191 357 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02191 Csa-Chr2:19704671 Csa04g00014 Csa-Chr4:114793 1.82E-52 dispersed
Csa06g01035 Csa-Chr6:8494138 Csa02g02191 Csa-Chr2:19704671 3.96E-35 dispersed
Csa05g01752 Csa-Chr5:20838859 Csa02g02191 Csa-Chr2:19704671 6.27E-54 transposed
Csa05g02366 Csa-Chr5:25920091 Csa02g02191 Csa-Chr2:19704671 2.23E-56 transposed
Csa02g02191 Csa-Chr2:19704671 Csa06g03126 Csa-Chr6:26701732 6.54E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02191 K18810 - csv:101216206 681.789