Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02193 ATGCCGCCACTGGGTGTGCAGCTCTTTATTACAGAACGTCAGGTGACAATGGACAATGGCATAGTTCAAGTCACGTTATCAAACCCAGATGGCATAGTAACTGGAATTCGATACGGTGGAGTTGACAACGTGCTCGAAGTCCTAAACGATGAATCTAACCGAGGGTATTGGGACCTCGTGTGGAGCTCATCATCGTCCACAACTGGATTGTTTGATGTGATAAAGGCTACAGGTTTCGAGGTCATAGTGGAAAATGAAGAACAAGTGGAACTCTCCTTTACAAGAACATGGGATCTGTCTCTCGAGGGAAAACTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTACTCTTACGCTATTTACCAACACCTGGAAGAATGGCCTGGTTTCAACCTTGGTGAAACTAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCACTATATGGCCATGGCAGACAACAGACAGAGGTACATGCCACTTCCAGATGACCGTTCTCCGCCTAGAGGTCGTGCCCTGGCATATCCAGAGGCTGTCCTGCTCGTCGACCCCATCGAACCTGAGCTCCAGGGAGAGGTGGATGACAAATATCAGTACTCATGCGACAACAAAGACAGCGGCGTCCATGGATGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCTCCCCGAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTAACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCACATTACGCGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTTTTCGGTCCTGTGTTCATCTATCTCAACTCCACTTATGATTCCTTCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCAGTGATCGAAGTCCAGAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAGGTCAAACCAACGTAGTAGTATCAGTGGTAAACTATTAGTCAAGGATAGCTACGTCAATGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTCCACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAATTTCTCCATCGATGGCGTGAGGCCGGGCGACTACAATCTGTATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTATGATGCTCTCATCAACCTTACAGAAGGCAGTGAGGTGGACATGGGAGACATAACATACGAACCTCCGAGACAAGGAGCCACACTATGGGAAATAGGAATCCCAGATCGCTCCGCAGCAGAGTTCTACGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTACCTTAACCATCCTGATAAGTTTCGGCAGTATGGCCTATGGGAAAGATACAGTGAATTGTTTCCCGACTCAGATTTGGTATATACCGTTGGCGTTAGTGACTACACCAAGGATTGGTTCTTTGCTCAGGTCCCCAGGAAGATGGAAAATGGGACATATAAGGGAACAACGTGGCAAGTGAAGTTCGAGCTAGACGACGTGGACAACCAAGCAACTTACAAGCTTCGGGTTGCATTGGCCTCCGTTTCTCTCGCAGAATTGCAGGTTGGAGTTAACGAGGCCAAAGCAAAGGCAGTGTTCTCGAGTGGACTTATCGGGAGGGACAATTCGATTGCAAGACACGGCATTCACGGCCTATATTGGGTTTACAACATTGACATTCCTGGAAATCGGCTGGTCACCGGCAATAACACCATCTTCTTCACCCAACCCAGATGCACAGGCCCTTTCCAAGCGATTATGTACGATTACATTCGTCTGGAAGCTCCTCCACCTCCATCCTCCGCCCATCCTTTGGAATAA 1926 48.91 MPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLVWSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLEEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSGVHGWISTDPAVGFWLISPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSFDALQLWEDAKAQAVIEVQSWPYSFPASDDFPRSNQRSSISGKLLVKDSYVNEDLIPADGAFVGLAPPGDVGSWQRESKGYQFWSRADESGNFSIDGVRPGDYNLYAWVPGFIGDYRYDALINLTEGSEVDMGDITYEPPRQGATLWEIGIPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELFPDSDLVYTVGVSDYTKDWFFAQVPRKMENGTYKGTTWQVKFELDDVDNQATYKLRVALASVSLAELQVGVNEAKAKAVFSSGLIGRDNSIARHGIHGLYWVYNIDIPGNRLVTGNNTIFFTQPRCTGPFQAIMYDYIRLEAPPPPSSAHPLE* 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19725119 19730941 + CsaV3_2G030120.1 Csa02g02193 520250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02193 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
Csa02g02193 641 CDD RGL4_N 13 293 - -
Csa02g02193 641 Gene3D - 331 427 - -
Csa02g02193 641 Gene3D - 7 291 IPR014718 GO:0030246
Csa02g02193 641 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Csa02g02193 641 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Csa02g02193 641 CDD RGL4_C 443 629 - -
Csa02g02193 641 CDD RGL4_M 332 431 IPR029413 -
Csa02g02193 641 SUPERFAMILY Galactose mutarotase-like 19 292 IPR011013 GO:0003824|GO:0005975|GO:0030246
Csa02g02193 641 Pfam Polysaccharide lyase family 4, domain II 355 426 IPR029413 -
Csa02g02193 641 Gene3D - 438 629 - -
Csa02g02193 641 SUPERFAMILY Starch-binding domain-like 355 427 IPR013784 GO:0030246
Csa02g02193 641 Pfam Rhamnogalacturonate lyase family 11 201 IPR010325 -
Csa02g02193 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02193 Csa-Chr2:19725119 Csa03g04506 Csa-Chr3:39289600 0 dispersed
Csa06g03509 Csa-Chr6:28655208 Csa02g02193 Csa-Chr2:19725119 0 transposed
Csa02g02193 Csa-Chr2:19725119 Csa03g04504 Csa-Chr3:39272026 0 wgd
Csa02g02193 Csa-Chr2:19725119 Csa06g03096 Csa-Chr6:26531028 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02193 K18195 - csv:101215720 1328.15