Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02198 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCCTCAATGATGGCGGATGACGACGGTGAATATGAAGATGGCGGCGGCGGCGGCGGAGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTTATGGCGTCTAGAGCTAGTGAACTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGAAGTTACTCCCGAAAAGGTACAAGCGGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAGCAGATGTACCTACAATGGAAGTACCATATGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGACGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACCTTATGCAATGCATGTGGTTTGATGTGGGCGAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCTGAAACTCCAATGGATGTGAAGCCTGTAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCAGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCTGGATGAAGAAGACATAAACGAAACCACTGGAGAGCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCATCAAATGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1059 47.5 MAAANPQPLQARPFQEHVQVPSMMADDDGEYEDGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRASELTLSFEGEVYVFPEVTPEKVQAVLLLLGGRDVPADVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPVIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDLDEEDINETTGELTNSLPMRIVNHSSNDDEQEPLVELANPSDTDIDIPTNFD* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19791788 19799588 - CsaV3_2G030170.1 Csa02g02198 520255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02198 352 MobiDBLite consensus disorder prediction 310 324 - -
Csa02g02198 352 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Csa02g02198 352 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
Csa02g02198 352 Pfam tify domain 68 99 IPR010399 -
Csa02g02198 352 MobiDBLite consensus disorder prediction 276 352 - -
Csa02g02198 352 Pfam CCT motif 133 174 IPR010402 GO:0005515
Csa02g02198 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 352 - -
Csa02g02198 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515
Csa02g02198 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355|GO:0043565
Csa02g02198 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Csa02g02198 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355|GO:0043565
Csa02g02198 352 MobiDBLite consensus disorder prediction 25 45 - -
Csa02g02198 352 SMART tify_2 65 100 IPR010399 -
Csa02g02198 352 PANTHER GATA TRANSCRIPTION FACTOR 28 1 352 IPR045280 GO:0006355
Csa02g02198 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355|GO:0043565
Csa02g02198 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Csa02g02198 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02198 - - - csv:101214596 670.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02198 Csa-Chr2:19791788 Csa01g00568 Csa-Chr1:3658056 3.56E-11 dispersed
Csa02g02198 Csa-Chr2:19791788 Csa02g02199 Csa-Chr2:19800418 7.53E-61 tandem
Csa07g02285 Csa-Chr7:21265420 Csa02g02198 Csa-Chr2:19791788 3.51E-72 transposed
Csa02g02198 Csa-Chr2:19791788 Csa07g00582 Csa-Chr7:4222943 3.22E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g02285 . 1 230 Tify Gene Family AT3G21175 56.5 4.9e-59 224.6
Csa02g02199 . 45 250 Tify Gene Family AT4G24470 59.6 2.6e-64 242.7
Csa07g00582 . 89 267 Tify Gene Family AT4G24470 60.2 2.6e-48 189.5
Csa07g02285 . 1 290 Tify Gene Family AT1G51600 58.7 1.3e-86 316.6
Csa07g00582 . 86 274 Tify Gene Family AT1G51600 59.4 1.8e-51 199.9
Csa02g02198 . 66 246 Tify Gene Family AT1G51600 57.4 6.9e-51 198.0
Csa02g02199 . 45 250 Tify Gene Family AT4G24470 59.6 2.6e-64 242.7
Csa07g00582 . 89 267 Tify Gene Family AT4G24470 60.2 2.6e-48 189.5
Csa07g02285 . 1 290 Tify Gene Family AT1G51600 58.7 1.3e-86 316.6
Csa07g00582 . 86 274 Tify Gene Family AT1G51600 59.4 1.8e-51 199.9
Csa02g02198 . 66 246 Tify Gene Family AT1G51600 57.4 6.9e-51 198.0
Csa07g02285 . 1 230 Tify Gene Family AT3G21175 56.5 4.9e-59 224.6
Csa02g01125 . 1 180 Tify Gene Family AT4G14713 51.0 2.2e-46 182.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31013 PF06203 CCT 1.30E-13 CL0281 Csa TF