Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02198 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCCTCAATGATGGCGGATGACGACGGTGAATATGAAGATGGCGGCGGCGGCGGCGGAGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTTATGGCGTCTAGAGCTAGTGAACTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGAAGTTACTCCCGAAAAGGTACAAGCGGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAGCAGATGTACCTACAATGGAAGTACCATATGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGACGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACCTTATGCAATGCATGTGGTTTGATGTGGGCGAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCTGAAACTCCAATGGATGTGAAGCCTGTAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCAGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCTGGATGAAGAAGACATAAACGAAACCACTGGAGAGCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCATCAAATGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1059 47.5 MAAANPQPLQARPFQEHVQVPSMMADDDGEYEDGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRASELTLSFEGEVYVFPEVTPEKVQAVLLLLGGRDVPADVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPVIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDLDEEDINETTGELTNSLPMRIVNHSSNDDEQEPLVELANPSDTDIDIPTNFD* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19791788 19799588 - CsaV3_2G030170.1 Csa02g02198 520255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02198 352 MobiDBLite consensus disorder prediction 310 324 - -
Csa02g02198 352 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Csa02g02198 352 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
Csa02g02198 352 Pfam tify domain 68 99 IPR010399 -
Csa02g02198 352 MobiDBLite consensus disorder prediction 276 352 - -
Csa02g02198 352 Pfam CCT motif 133 174 IPR010402 GO:0005515
Csa02g02198 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 352 - -
Csa02g02198 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515
Csa02g02198 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355|GO:0043565
Csa02g02198 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Csa02g02198 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355|GO:0043565
Csa02g02198 352 MobiDBLite consensus disorder prediction 25 45 - -
Csa02g02198 352 SMART tify_2 65 100 IPR010399 -
Csa02g02198 352 PANTHER GATA TRANSCRIPTION FACTOR 28 1 352 IPR045280 GO:0006355
Csa02g02198 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355|GO:0043565
Csa02g02198 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Csa02g02198 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02198 Csa-Chr2:19791788 Csa01g00568 Csa-Chr1:3658056 3.56E-11 dispersed
Csa02g02198 Csa-Chr2:19791788 Csa02g02199 Csa-Chr2:19800418 7.53E-61 tandem
Csa07g02285 Csa-Chr7:21265420 Csa02g02198 Csa-Chr2:19791788 3.51E-72 transposed
Csa02g02198 Csa-Chr2:19791788 Csa07g00582 Csa-Chr7:4222943 3.22E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31013 PF06203 CCT 1.30E-13 CL0281 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02198 - - csv:101214596 670.618