Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02199 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCGACTGTAGCGACACCGGCGAGCCATTGGATAATCGTCTTGTTCGATATGGAGCTCACTCTCTCGAAGACGGTGTTGGAGTAGGCGGCATGGTCGAGGTTCTCAACCCTGATGCTGTTTATGTTCCCGCCGGTGATGGGTCCGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCTCCTGAGAAGGTTCAAGCAGTGTTGTTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCCAAACCAGAGGAATGCTTTGGACTTGCCTGGACGGAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAACGATGTTTCGAAAAGAAAGTTAGATACGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGTTGGATGGTTCGTATAGCCATGGCAATGTCTCAGAGTTAGGTCAAGATGAAAGTCCATCGGAAACTTCATGTACAAATTGTGGCATAAGTTCAATGTCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCATGCGGGCTTTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTCCAAAGAGAAGTCAGGACCATCCGGTGACCCCGGCCGAGCAGACTGCAGACATGGTAACCATGCGCCAAGCAATCTCGTTTCTTTCTCAAACGGTGATACGGCTGCTTTAA 840 49.88 MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQFTSSKKLDGSYSHGNVSELGQDESPSETSCTNCGISSMSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLPKRSQDHPVTPAEQTADMVTMRQAISFLSQTVIRLL* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19800418 19806745 - CsaV3_2G030180.1 Csa02g02199 520256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02199 279 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Csa02g02199 279 MobiDBLite consensus disorder prediction 174 201 - -
Csa02g02199 279 Gene3D - 193 253 IPR013088 GO:0006355|GO:0008270
Csa02g02199 279 Pfam CCT motif 135 177 IPR010402 GO:0005515
Csa02g02199 279 SMART tify_2 68 103 IPR010399 -
Csa02g02199 279 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355|GO:0043565
Csa02g02199 279 Pfam tify domain 70 102 IPR010399 -
Csa02g02199 279 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Csa02g02199 279 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515
Csa02g02199 279 PANTHER GATA TRANSCRIPTION FACTOR 25 22 260 - -
Csa02g02199 279 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Csa02g02199 279 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Csa02g02199 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 246 - -
Csa02g02199 279 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Csa02g02199 279 PANTHER GATA TRANSCRIPTION FACTOR 28 22 260 IPR045280 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02199 Csa-Chr2:19800418 Csa07g00582 Csa-Chr7:4222943 1.15E-78 dispersed
Csa02g02198 Csa-Chr2:19791788 Csa02g02199 Csa-Chr2:19800418 7.53E-61 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31014 PF06203 CCT 5.20E-15 CL0281 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02199 - - csv:101214839 503.442