Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02199 | ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCGACTGTAGCGACACCGGCGAGCCATTGGATAATCGTCTTGTTCGATATGGAGCTCACTCTCTCGAAGACGGTGTTGGAGTAGGCGGCATGGTCGAGGTTCTCAACCCTGATGCTGTTTATGTTCCCGCCGGTGATGGGTCCGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCTCCTGAGAAGGTTCAAGCAGTGTTGTTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCCAAACCAGAGGAATGCTTTGGACTTGCCTGGACGGAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAACGATGTTTCGAAAAGAAAGTTAGATACGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGTTGGATGGTTCGTATAGCCATGGCAATGTCTCAGAGTTAGGTCAAGATGAAAGTCCATCGGAAACTTCATGTACAAATTGTGGCATAAGTTCAATGTCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCATGCGGGCTTTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTCCAAAGAGAAGTCAGGACCATCCGGTGACCCCGGCCGAGCAGACTGCAGACATGGTAACCATGCGCCAAGCAATCTCGTTTCTTTCTCAAACGGTGATACGGCTGCTTTAA | 840 | 49.88 | MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQFTSSKKLDGSYSHGNVSELGQDESPSETSCTNCGISSMSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLPKRSQDHPVTPAEQTADMVTMRQAISFLSQTVIRLL* | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 19800418 | 19806745 | - | CsaV3_2G030180.1 | Csa02g02199 | 520256 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02199 | 279 | CDD | ZnF_GATA | 202 | 249 | IPR000679 | GO:0006355|GO:0043565 | |
Csa02g02199 | 279 | MobiDBLite | consensus disorder prediction | 174 | 201 | - | - | |
Csa02g02199 | 279 | Gene3D | - | 193 | 253 | IPR013088 | GO:0006355|GO:0008270 | |
Csa02g02199 | 279 | Pfam | CCT motif | 135 | 177 | IPR010402 | GO:0005515 | |
Csa02g02199 | 279 | SMART | tify_2 | 68 | 103 | IPR010399 | - | |
Csa02g02199 | 279 | ProSiteProfiles | GATA-type zinc finger domain profile. | 197 | 256 | IPR000679 | GO:0006355|GO:0043565 | |
Csa02g02199 | 279 | Pfam | tify domain | 70 | 102 | IPR010399 | - | |
Csa02g02199 | 279 | Pfam | GATA zinc finger | 203 | 239 | IPR000679 | GO:0006355|GO:0043565 | |
Csa02g02199 | 279 | ProSiteProfiles | CCT domain profile. | 135 | 177 | IPR010402 | GO:0005515 | |
Csa02g02199 | 279 | PANTHER | GATA TRANSCRIPTION FACTOR 25 | 22 | 260 | - | - | |
Csa02g02199 | 279 | SMART | GATA_3 | 197 | 250 | IPR000679 | GO:0006355|GO:0043565 | |
Csa02g02199 | 279 | ProSiteProfiles | Tify domain profile. | 68 | 103 | IPR010399 | - | |
Csa02g02199 | 279 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 196 | 246 | - | - | |
Csa02g02199 | 279 | ProSitePatterns | GATA-type zinc finger domain. | 203 | 230 | IPR000679 | GO:0006355|GO:0043565 | |
Csa02g02199 | 279 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 22 | 260 | IPR045280 | GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02199 | Csa-Chr2:19800418 | Csa07g00582 | Csa-Chr7:4222943 | 1.15E-78 | dispersed | |
Csa02g02198 | Csa-Chr2:19791788 | Csa02g02199 | Csa-Chr2:19800418 | 7.53E-61 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31014 | PF06203 | CCT | 5.20E-15 | CL0281 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02199 | - | - | csv:101214839 | 503.442 |