Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02208 ATGGTTCATCCTGGTTCGACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCTACATCACTTGGTCTGAGGCACAATCCTGGAAGTCTTCAGCTCTTAAGGAGTGTAAGTCGCCCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTTTTGACGAGATCTTGTGATGCTTTACGTAGCAATCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTATTGGACCTCTTATGCGCTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGAAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAACCTCTACTGCTATGGACTGGAGCTACGCTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCGGTAGCCAGTCAGGCAGTCAAACAACGACTTCTGAATTTTGTTAGATCTCTGTCTACTGTTCTGGCATTTGCCTATTGTCTATCAAGCTTGATTCAACAAGTACAAAAGTTTGCTTATGAATCAAATGACCCAGGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCCTTGTTCATGGAATTGCTCGGCTTTTCTACTCAGAAGTGGCTCACTGCTGGAGGTCTCGGGACTGTGTTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCGTTTGTGGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTATCAGGAACGGTTGAGCACGTCGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCGGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGACATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACATCGTAGAATATTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTTCTCAGAGTTATCAGCCATCATAGGGCCCGGCTCGCCACTCCTATTCGCACTGTTCAGAAAATATATGGCGAGGCTGATTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTTCAGGGGCTACTAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGACAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCAACTGAAGAAAAGGAAGCCAAACAAGAGGCAGTCTCGACTTCAGGGACAAAAGCCCCCGACACAACTGGATCAACATCAAATCTTGATATGAAAGCAGATGATAAAAAACCAATTTCTCCATCTGGTATTACACCTAAGCCTTCAGCCCCCATTCTATCAACCAGCAGTTCAGAACAAAGCAGCGCTGAAAAGCCAGTAACCAGCAATGAGATAAAAGGAGAAAAGAAAGATATCCTGGGACTGAATTCCAAAGACAACATGCCACGAGCAACTCTGCCCAAAAGATCGCCTTCAGCTTCCAGTCCAGGGAGCGAGAAAGCTGATATTCCTTCCACAAGCTCGCAAAATAAGCAAGATGGGGAGAAGACGTCTGCATCACCACCATCAGTGGCGAGGCCACCATTGGAGGAGAATATTGTGCTGGGAGTTGCGTTGGAAGGTTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAAATTCCACACAGAGGAATGGGAGTGAGTTTCCCCCCAACAGTAAAGATTTGAAAGATGGCCAAATGCCTGCCGTTCCAGGCGCGACGAAAAATGATTGA 2115 43.64 MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSLGLRHNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTRSCDALRSNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESNDPGDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSGATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQEAVSTSGTKAPDTTGSTSNLDMKADDKKPISPSGITPKPSAPILSTSSSEQSSAEKPVTSNEIKGEKKDILGLNSKDNMPRATLPKRSPSASSPGSEKADIPSTSSQNKQDGEKTSASPPSVARPPLEENIVLGVALEGSKRTLPIDEDLDSKENSTQRNGSEFPPNSKDLKDGQMPAVPGATKND* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19856439 19863491 + CsaV3_2G030270.1 Csa02g02208 520265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02208 704 MobiDBLite consensus disorder prediction 660 674 - -
Csa02g02208 704 Gene3D - 298 353 IPR023408 -
Csa02g02208 704 MobiDBLite consensus disorder prediction 556 577 - -
Csa02g02208 704 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Csa02g02208 704 MobiDBLite consensus disorder prediction 603 635 - -
Csa02g02208 704 MobiDBLite consensus disorder prediction 578 592 - -
Csa02g02208 704 MobiDBLite consensus disorder prediction 496 704 - -
Csa02g02208 704 MobiDBLite consensus disorder prediction 521 538 - -
Csa02g02208 704 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 696 - -
Csa02g02208 704 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Csa02g02208 704 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 696 IPR045042 -
Csa02g02208 704 MobiDBLite consensus disorder prediction 496 520 - -
Csa02g02208 704 Gene3D - 192 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02208 Csa-Chr2:19856439 Csa03g00687 Csa-Chr3:6108124 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02208 K22047 - csv:101213477 1382.08