Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02208 | ATGGTTCATCCTGGTTCGACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCTACATCACTTGGTCTGAGGCACAATCCTGGAAGTCTTCAGCTCTTAAGGAGTGTAAGTCGCCCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTTTTGACGAGATCTTGTGATGCTTTACGTAGCAATCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTATTGGACCTCTTATGCGCTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGAAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAACCTCTACTGCTATGGACTGGAGCTACGCTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCGGTAGCCAGTCAGGCAGTCAAACAACGACTTCTGAATTTTGTTAGATCTCTGTCTACTGTTCTGGCATTTGCCTATTGTCTATCAAGCTTGATTCAACAAGTACAAAAGTTTGCTTATGAATCAAATGACCCAGGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCCTTGTTCATGGAATTGCTCGGCTTTTCTACTCAGAAGTGGCTCACTGCTGGAGGTCTCGGGACTGTGTTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCGTTTGTGGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTATCAGGAACGGTTGAGCACGTCGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCGGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGACATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACATCGTAGAATATTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTTCTCAGAGTTATCAGCCATCATAGGGCCCGGCTCGCCACTCCTATTCGCACTGTTCAGAAAATATATGGCGAGGCTGATTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTTCAGGGGCTACTAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGACAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCAACTGAAGAAAAGGAAGCCAAACAAGAGGCAGTCTCGACTTCAGGGACAAAAGCCCCCGACACAACTGGATCAACATCAAATCTTGATATGAAAGCAGATGATAAAAAACCAATTTCTCCATCTGGTATTACACCTAAGCCTTCAGCCCCCATTCTATCAACCAGCAGTTCAGAACAAAGCAGCGCTGAAAAGCCAGTAACCAGCAATGAGATAAAAGGAGAAAAGAAAGATATCCTGGGACTGAATTCCAAAGACAACATGCCACGAGCAACTCTGCCCAAAAGATCGCCTTCAGCTTCCAGTCCAGGGAGCGAGAAAGCTGATATTCCTTCCACAAGCTCGCAAAATAAGCAAGATGGGGAGAAGACGTCTGCATCACCACCATCAGTGGCGAGGCCACCATTGGAGGAGAATATTGTGCTGGGAGTTGCGTTGGAAGGTTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAAATTCCACACAGAGGAATGGGAGTGAGTTTCCCCCCAACAGTAAAGATTTGAAAGATGGCCAAATGCCTGCCGTTCCAGGCGCGACGAAAAATGATTGA | 2115 | 43.64 | MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSLGLRHNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTRSCDALRSNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESNDPGDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSGATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQEAVSTSGTKAPDTTGSTSNLDMKADDKKPISPSGITPKPSAPILSTSSSEQSSAEKPVTSNEIKGEKKDILGLNSKDNMPRATLPKRSPSASSPGSEKADIPSTSSQNKQDGEKTSASPPSVARPPLEENIVLGVALEGSKRTLPIDEDLDSKENSTQRNGSEFPPNSKDLKDGQMPAVPGATKND* | 705 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 19856439 | 19863491 | + | CsaV3_2G030270.1 | Csa02g02208 | 520265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02208 | 704 | MobiDBLite | consensus disorder prediction | 660 | 674 | - | - | |
Csa02g02208 | 704 | Gene3D | - | 298 | 353 | IPR023408 | - | |
Csa02g02208 | 704 | MobiDBLite | consensus disorder prediction | 556 | 577 | - | - | |
Csa02g02208 | 704 | Pfam | Mechanosensitive ion channel | 239 | 446 | IPR006685 | GO:0016020|GO:0055085 | |
Csa02g02208 | 704 | MobiDBLite | consensus disorder prediction | 603 | 635 | - | - | |
Csa02g02208 | 704 | MobiDBLite | consensus disorder prediction | 578 | 592 | - | - | |
Csa02g02208 | 704 | MobiDBLite | consensus disorder prediction | 496 | 704 | - | - | |
Csa02g02208 | 704 | MobiDBLite | consensus disorder prediction | 521 | 538 | - | - | |
Csa02g02208 | 704 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 1 | 696 | - | - | |
Csa02g02208 | 704 | SUPERFAMILY | Sm-like ribonucleoproteins | 282 | 352 | IPR010920 | - | |
Csa02g02208 | 704 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 1 | 696 | IPR045042 | - | |
Csa02g02208 | 704 | MobiDBLite | consensus disorder prediction | 496 | 520 | - | - | |
Csa02g02208 | 704 | Gene3D | - | 192 | 296 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02208 | Csa-Chr2:19856439 | Csa03g00687 | Csa-Chr3:6108124 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02208 | K22047 | - | csv:101213477 | 1382.08 |