Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02208 ATGGTTCATCCTGGTTCGACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCTACATCACTTGGTCTGAGGCACAATCCTGGAAGTCTTCAGCTCTTAAGGAGTGTAAGTCGCCCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTTTTGACGAGATCTTGTGATGCTTTACGTAGCAATCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTATTGGACCTCTTATGCGCTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGAAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAACCTCTACTGCTATGGACTGGAGCTACGCTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCGGTAGCCAGTCAGGCAGTCAAACAACGACTTCTGAATTTTGTTAGATCTCTGTCTACTGTTCTGGCATTTGCCTATTGTCTATCAAGCTTGATTCAACAAGTACAAAAGTTTGCTTATGAATCAAATGACCCAGGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCCTTGTTCATGGAATTGCTCGGCTTTTCTACTCAGAAGTGGCTCACTGCTGGAGGTCTCGGGACTGTGTTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCGTTTGTGGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTATCAGGAACGGTTGAGCACGTCGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCGGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGACATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACATCGTAGAATATTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTTCTCAGAGTTATCAGCCATCATAGGGCCCGGCTCGCCACTCCTATTCGCACTGTTCAGAAAATATATGGCGAGGCTGATTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTTCAGGGGCTACTAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGACAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCAACTGAAGAAAAGGAAGCCAAACAAGAGGCAGTCTCGACTTCAGGGACAAAAGCCCCCGACACAACTGGATCAACATCAAATCTTGATATGAAAGCAGATGATAAAAAACCAATTTCTCCATCTGGTATTACACCTAAGCCTTCAGCCCCCATTCTATCAACCAGCAGTTCAGAACAAAGCAGCGCTGAAAAGCCAGTAACCAGCAATGAGATAAAAGGAGAAAAGAAAGATATCCTGGGACTGAATTCCAAAGACAACATGCCACGAGCAACTCTGCCCAAAAGATCGCCTTCAGCTTCCAGTCCAGGGAGCGAGAAAGCTGATATTCCTTCCACAAGCTCGCAAAATAAGCAAGATGGGGAGAAGACGTCTGCATCACCACCATCAGTGGCGAGGCCACCATTGGAGGAGAATATTGTGCTGGGAGTTGCGTTGGAAGGTTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAAATTCCACACAGAGGAATGGGAGTGAGTTTCCCCCCAACAGTAAAGATTTGAAAGATGGCCAAATGCCTGCCGTTCCAGGCGCGACGAAAAATGATTGA 2115 43.64 MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSLGLRHNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTRSCDALRSNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESNDPGDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSGATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQEAVSTSGTKAPDTTGSTSNLDMKADDKKPISPSGITPKPSAPILSTSSSEQSSAEKPVTSNEIKGEKKDILGLNSKDNMPRATLPKRSPSASSPGSEKADIPSTSSQNKQDGEKTSASPPSVARPPLEENIVLGVALEGSKRTLPIDEDLDSKENSTQRNGSEFPPNSKDLKDGQMPAVPGATKND* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19856439 19863491 + CsaV3_2G030270.1 Csa02g02208 520265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02208 704 MobiDBLite consensus disorder prediction 660 674 - -
Csa02g02208 704 Gene3D - 298 353 IPR023408 -
Csa02g02208 704 MobiDBLite consensus disorder prediction 556 577 - -
Csa02g02208 704 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Csa02g02208 704 MobiDBLite consensus disorder prediction 603 635 - -
Csa02g02208 704 MobiDBLite consensus disorder prediction 578 592 - -
Csa02g02208 704 MobiDBLite consensus disorder prediction 496 704 - -
Csa02g02208 704 MobiDBLite consensus disorder prediction 521 538 - -
Csa02g02208 704 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 696 - -
Csa02g02208 704 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Csa02g02208 704 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 696 IPR045042 -
Csa02g02208 704 MobiDBLite consensus disorder prediction 496 520 - -
Csa02g02208 704 Gene3D - 192 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02208 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1382.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02208 Csa-Chr2:19856439 Csa03g00687 Csa-Chr3:6108124 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00877 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.0 5.1e-152 534.6
Csa02g02208 . 10 675 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.3e-195 679.1
Csa03g00687 . 63 723 Mechanosensitive Ion Channel Family AT5G10490 56.4 1.8e-184 642.9
Csa02g02208 . 10 667 Mechanosensitive Ion Channel Family AT1G58200 58.7 2.2e-198 689.1
Csa03g00687 . 43 505 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G53470 52.2 1.2e-236 816.6
Csa06g01060 . 43 870 Mechanosensitive Ion Channel Family AT3G14810 50.3 1.1e-226 783.5
Csa07g00130 . 59 955 Mechanosensitive Ion Channel Family AT1G78610 55.9 2.9e-272 934.9
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G78610 56.3 6.3e-259 890.6
Csa04g02574 . 18 272 Mechanosensitive Ion Channel Family AT1G78610 50.6 8.4e-70 262.3
Csa07g00130 . 269 943 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.7e-221 764.2
Csa06g01060 . 217 877 Mechanosensitive Ion Channel Family AT2G17000 57.1 1.7e-216 749.6
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G19520 56.6 2.6e-83 307.0
Csa01g02964 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.1 4.2e-195 678.3
Csa04g02572 . 798 1452 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-191 665.2
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G12080 65.2 2.4e-97 353.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71