Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02211 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGGCAGGTGACGTTCTCTAAGCGACGGAGAGGGCTTATCAAGAAGGCTGAGGAGCTGTCGGTCCTCTGCGACGCCGAGGTTGCGCTCCTCGTCTTCTCTGCCACCGGGAAGTTCTTTGAGTATTCAAACTCCAGTATTAAGGATGTTATAGCTAGATATAATTTGCACTCTAGTAACCTTGGAAAGTTGGAATATCCATCCATCGGGTTGCAGGTTGAAGATAGCAACCACGTCCAATTGAATAAGGAAGTTGAAGATATGAACCAACAACTTAGGCAGATGAGGGGAGAGGATCTTCAAGGATTGAACTTAGAAGATTTGAAGCAATTGGAAAGAAAGCTTGAAGTTGGTCTCACACGAGTTCTTCACACCAAGGAAAAGAAGATTATGAGGGAAATTGATGAACTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAAACAGCAGATGTTAAGGCTGTCGAATGAAAGATTAATGGCGGTGCTTGTGGATTCCTCCGACGTTCGTGTGGCTGCGGAAGAAGGACTTTCGTCGGAATCCGCCGCCAACGTCTATAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACCTCTCTCAAATTAGGGCCTCCTTGCCCAAATTGA 693 47.19 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLVFSATGKFFEYSNSSIKDVIARYNLHSSNLGKLEYPSIGLQVEDSNHVQLNKEVEDMNQQLRQMRGEDLQGLNLEDLKQLERKLEVGLTRVLHTKEKKIMREIDELELKGARLMEENKMLKQQMLRLSNERLMAVLVDSSDVRVAAEEGLSSESAANVYSCNSGPPADDDSSDTSLKLGPPCPN* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19879642 19887659 - CsaV3_2G030300.1 Csa02g02211 520268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02211 230 MobiDBLite consensus disorder prediction 199 216 - -
Csa02g02211 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa02g02211 230 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa02g02211 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Csa02g02211 230 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Csa02g02211 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa02g02211 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa02g02211 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa02g02211 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa02g02211 230 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa02g02211 230 Coils Coil 142 176 - -
Csa02g02211 230 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Csa02g02211 230 Coils Coil 86 113 - -
Csa02g02211 230 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 224 - -
Csa02g02211 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa02g02211 230 MobiDBLite consensus disorder prediction 195 230 - -
Csa02g02211 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa02g02211 230 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02211 Csa-Chr2:19879642 Csa04g01180 Csa-Chr4:10220360 5.03E-52 dispersed
Csa02g02211 Csa-Chr2:19879642 Csa03g04509 Csa-Chr3:39311564 9.97E-41 wgd
Csa02g02211 Csa-Chr2:19879642 Csa06g03115 Csa-Chr6:26630513 7.86E-88 wgd
Csa02g02211 Csa-Chr2:19879642 Csa07g00595 Csa-Chr7:4326875 4.13E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31016 PF01486 K-box 6.50E-16 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02211 - - csv:101213234 441.81