Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02215 ATGTTATCCAAATTCCATCTCTCCCCCCACCCTTTTACCCACCATCCTCCGCCGCAACCTCCCGTGGATGAGCCTATCGCTGCCCTGCCTTCCCCTTTTAAACACCACACGGACCTCACCTCCACCGCCGATGGTTCCACCATCGAGGTGGTCCGACGGCCCAGGGGTCGCCCACCGGGTTCTAAAAATAAACCCAAACCGCCTCTTGTTGTAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTACCTGGTGGAAACGACGTCGTTGAAGCTATTTCGAGATTTTCCCGTCGCAAAAATTTGGGACTTTGTGTTCTAAACGGATCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACTCCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTTTTTCCTCAATCAACGCCGTTACCGTTACCTAATGGTTTTTCCATCTCCCTTGCCGGGCCTCAGGGTCAAATCGTCGGCGGTTTGGTTGCTGGCGCGTTAATTGCCGCCGGTACCGTTTTTGTCGTCGCCTCGTCCTTTAATAATCCCTTTTACCATCGGCTTCCTGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCACTCCCCACACGTCTCCGGCGGCGGAGATAGTAGCGGGCAGGGACATGGGCACGGGCAGATTGCGGAAACGTGTGGAATGGCTATGTATAGTTGCCACGCGCCGTCCGATGTAATTTGGGCGCCGACGGCGAGGCAACCACCGCCGCCGTACTGA 819 55.92 MLSKFHLSPHPFTHHPPPQPPVDEPIAALPSPFKHHTDLTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVVTREPEPAMRPYVLEVPGGNDVVEAISRFSRRKNLGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQSTPLPLPNGFSISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPFYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGQGHGHGQIAETCGMAMYSCHAPSDVIWAPTARQPPPPY* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19910568 19911386 + CsaV3_2G030340.1 Csa02g02215 520272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02215 272 MobiDBLite consensus disorder prediction 1 72 - -
Csa02g02215 272 Gene3D - 79 211 - -
Csa02g02215 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 205 - -
Csa02g02215 272 ProSiteProfiles PPC domain profile profile. 76 214 IPR005175 -
Csa02g02215 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 39 271 - -
Csa02g02215 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 271 IPR014476 GO:0003680
Csa02g02215 272 CDD DUF296 80 193 IPR005175 -
Csa02g02215 272 MobiDBLite consensus disorder prediction 11 27 - -
Csa02g02215 272 MobiDBLite consensus disorder prediction 208 241 - -
Csa02g02215 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 195 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02215 Csa-Chr2:19910568 Csa03g01009 Csa-Chr3:8151266 7.80E-52 dispersed
Csa01g03224 Csa-Chr1:28374192 Csa02g02215 Csa-Chr2:19910568 9.50E-48 transposed
Csa02g02215 Csa-Chr2:19910568 Csa03g04489 Csa-Chr3:39112677 1.39E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02215 - - csv:101203998 472.626