Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02228 ATGTTGGAAGCTGGAGCATATCCTAGTAATTACACGCTCGGAATCGTGTTGAATGCTTGTTCTTCCCTGCAATCTATCGAATTTGGGAAGCAGGTTCATGCATATCTTATCAAATACCATATAGATTTTGATACAAGTATTGGCAACTCTCTTTCTAGTTTCTACTCTAAGTTCAGAAGATTGGAATTTGCAATAAAAGCCTTCAAGATAATCAAGGAAAAGGATGTCATTTCATGGACTTCAGTTATATCTTCTTGTTGTGATAATGGTCAAGCAGCTCGGAGTTTAAGTTTCTTCATGGACATGCTCTCGGATGGCATGAAACCAAACGAGTACACTTTAACAAGTGTTTTGAGCGCTTGTTGTGTAATGCTGACATTGGATTTAGGAGCACAGATTCATTCACTAAGCATTAAGCTTGGTTATGGTTCAAGCATACTGATAAAAAATTCGATCATGTATTTGTACTTGAAATGTGGATGGCTTATTGAGGCTCAGAAATTGTTTGAAGGTATGGAGACTCTCAATTTGGTTACATGGAATGCAATGATTGCAGGCCATGCTAAAATGATGGATCTTGCTGAAGATGATGTTGCAGCTCACAAGAGTGGTTCTACAGCACTTGCTATGTTCCAGAAATTATATCGCTCGGGAATGAAACCCGATCTGTTCACATTTTCGAGCGTTTTGAGTGTTTGTAGTAATCTAGTAGCCTTAGAACAAGGGGAACAGATTCATGGTCAGATAATCAAAAGTGGTGTTTTGGCAGATGTTGTGGTGGGAACTGCACTGGTGAGTATGTATAACAAATGTGGAAGTATAGACAAGGCGAGTAAGGCTTTCTTGGAGATGCCTTCGAGAACAATGATATCATGGACTTCGATGATTACGGGATTTGCACGACATGGTTTGTCTCAACAAGCACTTCAACTCTTTGAAGACATGAGATTGGTAGGAATTAAACCAAACCAAGTCACTTTTGTAGGAGTTCTATCAGCTTGTAGCCATGCTGGTTTGGCTGATGAAGCACTCTATTATTTTGAATTAATGCAAAAGCAATACAACATTAAGCCTGTAATGGACCATTTTGCATGCTTGATTGACATGTATTTGAGGTTGGGTCGGGTTGAAGAAGCTTTCGATGTAGTCCATAAGATGAATTTTGAGCCTAACGAAACTATCTGGTCCATGTTAATAGCTGGATGTCGAAGTCATGGGAAATCCGATTTAGGGTTTTACGCTGCCGAGCAGTTACTCAAACTCAAACCAAAAGACGTCGAGACATATGTCTCTCTGCTAAACATGCACATCTCTGCTGGGAGATGGAAGGATGTTTCGAAAGTGAGGAAATTAATGAAAGAAGAGAAGGTTGGGAAGTTGAAAGATTGGAGCTGGATTAGCATCAAAGAAAAAGTTTATTCGTTCAAACCTAATGACAAGTCTCATTGTCAAAGTCTAGAGATGTACAAGTTGTTGGAGACTGTACTCAATGAGGTAAAAGCCCTCGGTTACGAGCCTATTGAAGATGTGGAAGTAATTGAAAAAGAGGAAAACGAGGAAAGGGTATTATCTTCTACCGTTCTTCATAGCGAAAAGTTAGCCATTGCTTTCGGTTTGTTAAACCTGCCAACTGCGACCCCAATTCGGGTTGTAAAGAGCATCACCATGTGTAGGGATTGCCACAATTTTATCAGATTCATTTCTTTATTGAAAGGAAGGGAAATTGTCATCAGAGATAGTAAGCAGCTTCACAAGTTTTTGAACGGATACTGTTCTTGTGGAGGATATGGAGATAATCTTTAA 1803 39.43 MLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGYGDNL* 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20002499 20005942 + CsaV3_2G030470.1 Csa02g02228 520285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02228 600 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 1 532 - -
Csa02g02228 600 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Csa02g02228 600 TIGRFAM PPR: pentatricopeptide repeat domain 77 111 IPR002885 -
Csa02g02228 600 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Csa02g02228 600 TIGRFAM PPR: pentatricopeptide repeat domain 363 386 IPR002885 -
Csa02g02228 600 Pfam PPR repeat 150 175 IPR002885 -
Csa02g02228 600 Pfam PPR repeat 178 193 IPR002885 -
Csa02g02228 600 Pfam PPR repeat 262 287 IPR002885 -
Csa02g02228 600 Pfam PPR repeat 365 386 IPR002885 -
Csa02g02228 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Csa02g02228 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Csa02g02228 600 Pfam PPR repeat family 290 335 IPR002885 -
Csa02g02228 600 Pfam PPR repeat family 74 122 IPR002885 -
Csa02g02228 600 Gene3D Tetratricopeptide repeat domain 341 500 IPR011990 GO:0005515
Csa02g02228 600 Gene3D Tetratricopeptide repeat domain 136 237 IPR011990 GO:0005515
Csa02g02228 600 Gene3D Tetratricopeptide repeat domain 238 340 IPR011990 GO:0005515
Csa02g02228 600 PANTHER OS01G0913400 PROTEIN-RELATED 1 532 - -
Csa02g02228 600 Pfam DYW family of nucleic acid deaminases 504 596 IPR032867 GO:0008270
Csa02g02228 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Csa02g02228 600 Gene3D Tetratricopeptide repeat domain 1 135 IPR011990 GO:0005515
Csa02g02228 600 Pfam E motif 408 466 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02228 - - - csv:101207363 1176.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02228 Csa-Chr2:20002499 Csa01g01529 Csa-Chr1:10937585 2.42E-25 dispersed
Csa02g02228 Csa-Chr2:20002499 Csa03g01691 Csa-Chr3:12669403 5.78E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29