Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02229 ATGGTGGTTAGAAAAGTCGGCAAGTACGAGGTCGGGAGGACGATTGGTGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGAGCAGATAAAGAAGGAGATTTCAATCATGAAGCTTGTGAGGCACCCTTATGTCGTTCGTCTTCATGAGGTTCTTGCAAGCCGGACTAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCGTCATGGACGGCTTAGTGAAGCTGAATCTAGGAAGTACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAGGGGAGTATACCACAGAGATTTAAAACCTGAGAATCTGCTACTCGACTCCCTAGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCGTTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTACGATGGTGCTATGGCAGACGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGATGAGCTTGATCTCACCACGTTATATAGTAAGATTGAAAGAGCCGATTTTTCATGTCCATCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCTGCAGAATATTTGACCCCAATCCTTCTACTCGTATTACAATTGAACAGATCAGAGAGGATGAGTGGTTCAAGAAAAATTATGTTTCAGTCAAATTGGTCGAAGACGAAGATGTAAATCTGGATGATGTGAATGCTGTCTTTGATGATCCTGAGGAACCAAGGACCGAAGAACAACGCAGTAACGAGAACATGTGCCCTCTGGCCCTTAATGCATTTGATCTAATAATTCTATCACAAGGCTTAAACCTGGGAACGATGTTTGACCGTGGCCAGGATTCTATGAAGTACCCTACACGCTTCGTCTGCCAAAAGCCTGCAAAGGTCTTATTATCAACAATGGAAGTCGTAGCTCAATCAATGGGTTTCAAGACACACATACGCAATTACAAGATGAGAGTAGAAGGTCCTTCGGCAAGTAAAACTTCGTATTTCTCAGTCATTATGGAAATTTTTGAAGTTGCTCCCACGTTCTTTATGGTCGACATTCAGAAAGCAGCAGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAGCTTTTATGGCAATCTTGAAGACATCGTCTGGAAACCATCATTTGACACCAGCAAATCGAGAATCGCCAAGAACAAAAGTAAAAAACGTTGA 1341 43.33 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVEQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVRHGRLSEAESRKYFQQLIDGVDYCHSRGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDELDLTTLYSKIERADFSCPSWFPVGAKALICRIFDPNPSTRITIEQIREDEWFKKNYVSVKLVEDEDVNLDDVNAVFDDPEEPRTEEQRSNENMCPLALNAFDLIILSQGLNLGTMFDRGQDSMKYPTRFVCQKPAKVLLSTMEVVAQSMGFKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYGNLEDIVWKPSFDTSKSRIAKNKSKKR* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20005697 20011662 - CsaV3_2G030480.1 Csa02g02229 520286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02229 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02229 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Csa02g02229 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Csa02g02229 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02229 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02229 446 PANTHER - 2 443 - -
Csa02g02229 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Csa02g02229 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Csa02g02229 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
Csa02g02229 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Csa02g02229 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Csa02g02229 446 SUPERFAMILY Protein kinase-like (PK-like) 6 263 IPR011009 -
Csa02g02229 446 CDD CIPK_C 309 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02020 Csa-Chr1:17063868 Csa02g02229 Csa-Chr2:20005697 1.62E-155 dispersed
Csa02g02229 Csa-Chr2:20005697 Csa04g01217 Csa-Chr4:10801059 0 dispersed
Csa02g02229 Csa-Chr2:20005697 Csa01g02318 Csa-Chr1:20282952 8.24E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77921 PF00069 Pkinase 1.50E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02229 - - csv:101222107 887.1