Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02231 ATGTGCCCTATATATATAATCATGGGGGCAGAACCGCCATTAGAGAGTGAGAGAAAGCTTGAGAGAGAGATGGAGCTCGACGAACATGTCTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATCCAAATTGGGAAGCCATTCCAAACGAAATTACCGATCTCTGCTCAAATGCTTGGCCATTCGATTACTGTTTCGATCAGAATACTCTTAGTTTTCCCCCAAATTCTTCCTCCCAACCTCTATCCACCCACAATCTCCACGAATTTTACAATCCTTTGCCAAATGAGTTCTCAGTACCACAAATTCCTGATTCCGCCTTTACGGCCATGGAAGTAGCAGCAGCAGCAGCTGTAGCCGCCGCGCCTCTGACATTTCAGCCAGAGCATCCGAATGTAGAGCGAGAAGAAGAGGAGGAAGAGGAGGAGGAGCAATTAGGTTTTCTAGCGGATGAGATTCAGAATATGGAAGCAGTTCAAGTTGAATCGATTTGTAAAATGGAGCCGAATCAATCTCCGGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCTCCTCCTCCTTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGGCAACCGTCGAAGAATCTGATGGCGGAGAGAAGGAGAAGGAAGCGTTTGAACGATCGACTGTCAATGCTCAGATCTATCGTTCCAAAGATCAGTAAGATGGATAGAACAGCGATTTTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAATGAAGTGGAAGGATCAAATTCGAGGATGAATTCGTTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGAAATACACCAAAATTTGAAGTGGAAAGCAGAGATGGAGAGACGAGAATCGAGATATGTTGTGGGGGAAAACCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTCGAGATTCAACAATGTGTTATTAGCTGCTTCAACGACTTCGCATTGCAAGCCACTTGCTCTTCTCAGGAAATGAAGCAGAGAACAAGAGAAGTGGAGGCAGAAGAATTGAAGGAAGCATTATTTAGGAATGCAGGTTATGGAGGAAGCTGCTTGTAG 1116 44.62 MCPIYIIMGAEPPLESERKLEREMELDEHVFLEELMALRRDPNWEAIPNEITDLCSNAWPFDYCFDQNTLSFPPNSSSQPLSTHNLHEFYNPLPNEFSVPQIPDSAFTAMEVAAAAAVAAAPLTFQPEHPNVEREEEEEEEEEQLGFLADEIQNMEAVQVESICKMEPNQSPEELQVFNIGTCSSSSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQNEVEGSNSRMNSLKNTKPSEFVVRNTPKFEVESRDGETRIEICCGGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQEMKQRTREVEAEELKEALFRNAGYGGSCL* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20027274 20029389 + CsaV3_2G030500.1 Csa02g02231 520288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02231 371 CDD ACT_UUR-ACR-like 295 360 - -
Csa02g02231 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Csa02g02231 371 Gene3D - 203 276 IPR036638 GO:0046983
Csa02g02231 371 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 26 371 - -
Csa02g02231 371 Coils Coil 138 158 - -
Csa02g02231 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 268 IPR036638 GO:0046983
Csa02g02231 371 PANTHER DNA BINDING PROTEIN 26 371 - -
Csa02g02231 371 SMART finulus 206 255 IPR011598 GO:0046983
Csa02g02231 371 Coils Coil 239 273 - -
Csa02g02231 371 MobiDBLite consensus disorder prediction 189 214 - -
Csa02g02231 371 Pfam Helix-loop-helix DNA-binding domain 206 249 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02231 Csa03g04520 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02231 Csa-Chr2:20027274 Csa05g01831 Csa-Chr5:21650877 7.05E-19 dispersed
Csa01g00990 Csa-Chr1:6174783 Csa02g02231 Csa-Chr2:20027274 4.11E-37 transposed
Csa03g02566 Csa-Chr3:24067204 Csa02g02231 Csa-Chr2:20027274 1.33E-36 transposed
Csa02g02231 Csa-Chr2:20027274 Csa03g04520 Csa-Chr3:39394424 3.15E-90 wgd
Csa02g02231 Csa-Chr2:20027274 Csa06g03087 Csa-Chr6:26485325 1.42E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31018 PF00010 HLH 7.20E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02231 - - csv:101221329 684.1