Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02231 | ATGTGCCCTATATATATAATCATGGGGGCAGAACCGCCATTAGAGAGTGAGAGAAAGCTTGAGAGAGAGATGGAGCTCGACGAACATGTCTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATCCAAATTGGGAAGCCATTCCAAACGAAATTACCGATCTCTGCTCAAATGCTTGGCCATTCGATTACTGTTTCGATCAGAATACTCTTAGTTTTCCCCCAAATTCTTCCTCCCAACCTCTATCCACCCACAATCTCCACGAATTTTACAATCCTTTGCCAAATGAGTTCTCAGTACCACAAATTCCTGATTCCGCCTTTACGGCCATGGAAGTAGCAGCAGCAGCAGCTGTAGCCGCCGCGCCTCTGACATTTCAGCCAGAGCATCCGAATGTAGAGCGAGAAGAAGAGGAGGAAGAGGAGGAGGAGCAATTAGGTTTTCTAGCGGATGAGATTCAGAATATGGAAGCAGTTCAAGTTGAATCGATTTGTAAAATGGAGCCGAATCAATCTCCGGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCTCCTCCTCCTTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGGCAACCGTCGAAGAATCTGATGGCGGAGAGAAGGAGAAGGAAGCGTTTGAACGATCGACTGTCAATGCTCAGATCTATCGTTCCAAAGATCAGTAAGATGGATAGAACAGCGATTTTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAATGAAGTGGAAGGATCAAATTCGAGGATGAATTCGTTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGAAATACACCAAAATTTGAAGTGGAAAGCAGAGATGGAGAGACGAGAATCGAGATATGTTGTGGGGGAAAACCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTCGAGATTCAACAATGTGTTATTAGCTGCTTCAACGACTTCGCATTGCAAGCCACTTGCTCTTCTCAGGAAATGAAGCAGAGAACAAGAGAAGTGGAGGCAGAAGAATTGAAGGAAGCATTATTTAGGAATGCAGGTTATGGAGGAAGCTGCTTGTAG | 1116 | 44.62 | MCPIYIIMGAEPPLESERKLEREMELDEHVFLEELMALRRDPNWEAIPNEITDLCSNAWPFDYCFDQNTLSFPPNSSSQPLSTHNLHEFYNPLPNEFSVPQIPDSAFTAMEVAAAAAVAAAPLTFQPEHPNVEREEEEEEEEEQLGFLADEIQNMEAVQVESICKMEPNQSPEELQVFNIGTCSSSSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQNEVEGSNSRMNSLKNTKPSEFVVRNTPKFEVESRDGETRIEICCGGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQEMKQRTREVEAEELKEALFRNAGYGGSCL* | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 20027274 | 20029389 | + | CsaV3_2G030500.1 | Csa02g02231 | 520288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02231 | 371 | CDD | ACT_UUR-ACR-like | 295 | 360 | - | - | |
Csa02g02231 | 371 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 200 | 249 | IPR011598 | GO:0046983 | |
Csa02g02231 | 371 | Gene3D | - | 203 | 276 | IPR036638 | GO:0046983 | |
Csa02g02231 | 371 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 26 | 371 | - | - | |
Csa02g02231 | 371 | Coils | Coil | 138 | 158 | - | - | |
Csa02g02231 | 371 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 204 | 268 | IPR036638 | GO:0046983 | |
Csa02g02231 | 371 | PANTHER | DNA BINDING PROTEIN | 26 | 371 | - | - | |
Csa02g02231 | 371 | SMART | finulus | 206 | 255 | IPR011598 | GO:0046983 | |
Csa02g02231 | 371 | Coils | Coil | 239 | 273 | - | - | |
Csa02g02231 | 371 | MobiDBLite | consensus disorder prediction | 189 | 214 | - | - | |
Csa02g02231 | 371 | Pfam | Helix-loop-helix DNA-binding domain | 206 | 249 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa02g02231 | Csa03g04520 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02231 | Csa-Chr2:20027274 | Csa05g01831 | Csa-Chr5:21650877 | 7.05E-19 | dispersed | |
Csa01g00990 | Csa-Chr1:6174783 | Csa02g02231 | Csa-Chr2:20027274 | 4.11E-37 | transposed | |
Csa03g02566 | Csa-Chr3:24067204 | Csa02g02231 | Csa-Chr2:20027274 | 1.33E-36 | transposed | |
Csa02g02231 | Csa-Chr2:20027274 | Csa03g04520 | Csa-Chr3:39394424 | 3.15E-90 | wgd | |
Csa02g02231 | Csa-Chr2:20027274 | Csa06g03087 | Csa-Chr6:26485325 | 1.42E-82 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31018 | PF00010 | HLH | 7.20E-10 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02231 | - | - | csv:101221329 | 684.1 |