Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02233 ATGGGTACTGGTTGGAGGAAAGCGTTTTGTACTACCATTTCTCGAGATTCAGAATCTAATAATGCTTCTGAGAAACAGAGGAGCTCTGCTACTCCTAATCCCAGTCCTAGAAGCTGTGTTCGATTGGGTTTCTTCAGTAACCCTTCTACTCCTCGGATGCAATCTCATCAGCCATTGAGTAGTCCAGGTCTTCGTTGCCGTACTGCTCAAGATGCCACTGTTAATCAAAGTCCCACTCTTCATTGCAAAACCTCATCTTCCTCTTCATCAACTCCTAAATCTGCTAAATCCCAACGAGGGATTTTGGGTTCGAATCCTTCCTCTCCTCGTTCCCCTCTTAAACTCTCTCTTTTCAAGAACAGCTTTAAGTTCAGAAGTAGCTGTGGAATTTGTTTGAATAGCGTAAAAACAGGGCATGGGACGGCGATTTACACGGCGGAGTGTGGGCATGCTTTTCATTTTCCTTGTATTGCTGCTCATGTCAGAAACCATGCCACTCTTGTTTGCCCTGTCTGCAACACTACATGGAAGGACGTTCCTCTGCTCGCCGCCCATAAGAATTTGGGCCCATTGACCCAACACGATCCTAAACCCAAGATTGAAGATAAAACCATGATTGAATCTTCCCCCCGAGCGGTTAAAACCAAACTAAACCCAAAAGAAAAGGAATTCAGATCCTATGATGACGATGAGCCCCTTCTGTCTCCAACCTCCGGTGGCCGGATTATCCCAATCCCTGAAGCCGATGAGAACCAAGACGATGTGGAGGAATTTCAAGGCTTCTTCGTTGACCCAAAGCCGCCTTCCAGTTCAGTTAAATCTTCAATTCAGAGGACCAATGTACAGGTTCGACTCCTCCCTGAAACGGCGTTGATTTCATCTGGACACACTCACGAGACCTACGCGGTCGCTCTGAAAGTAAAAGCCCCGCCGCCACATCCGGCTAGAAACAGAGCAAATGCCAATTTATTGGACCCATCCCGCCGTGCGCCGATTGATTTAGTTACAGTGCTGGATGTAAGCGGAAGCATGACGGGGCCGAAATTAATGATGCTGAAGCGTGCCATGCGATTGGTTATTTCGTCGTTAGGGTCATCGGACCGCCTTGCCATCGTTGCTTTCTCTGCCACTCCTAAAAGGGTGTTGCCGTTGAGGAGAATGACGGCTCAAGGCCAACGCGCTGCCCGGCACGTGATTGACACGCTGGTCTGCAGCCAAGGAACCAGCGTAGGAGAGGCTTTGAGAAAAGCCACAAAAGTACTCGAGGACCGGCGAGAGAGAAACCCAGTAGCTAGTATCATGCTTTTGTCAGACGGCCAAGATGAACGGATCCAGTCAAATCAACGGCAGGTGACACGACACGAGTCATCTACAAGATTCGCCCACATAGAAATCCCGGTTCATGCATTTGGGTTCGGAAAGAGCGGTGGATACTGTCAAGAACCGGCGGAGGACGCATTTGCAAAATGCGTAAGTGGATTATTAAGCGTGGTGGTTCAAGATCTCCGTATTCAACTCGGGTTTTCAAGCGGTTCATCTCCGGTAGTGATCTCCGCTATTTATTCATGTACCGGGCGGCCCACGGTTTGCAGTTTGGGTTCGGTCCGGCTTGGAGATTTATACGGCGAGGAAGAAAGGGAATTACTCGTAGAGTTGAAGATTCCAACCTCGGCTTCAGGGACCCACCACGTGATGACGATGCAATGTCTTTACAAAGACCCGTCCACACAGGAGGTAGTGTACAGCCGAGAACAAGACATCCTCATTGCACGACCCACAGCCGTTGGATCATCCACTCCTAAGATCGAAAGGCTGAGAGACATGTTCATAACAACTCGCGCTGTGGCGGAATCCAGGAGATTAATCGAGTACGAAGACCATACGAGCGCGCATCACTTACTCGCCTCCGCGCGTGCATTACTAATCCAATCCGGATCACCAAGTGCTGACGTGTACGTGCGGGAGCTGGAAGTTGAGCTGGCGGAACTCCATTGGCGAAGGCAACAACAATTCGAATTACATCAGCACCAGCAGCAACAACAAATTTTGGTGACAACAACGCCACGTAGGCGAGGGGGTGATAAGGAAAATCCCACAATGGTGGATGAAAACGGAGAGCCGTTAACACCGACGTCGGCGTGGAGAGCGGCGGAGAAGCTTGCCAGAGTAGCGATTATGAAAAAATCGTTGACGAGTAGAGTGGGGGATTTACACGGGTTTGAAAATGCGAGATTCTAG 2238 49.6 MGTGWRKAFCTTISRDSESNNASEKQRSSATPNPSPRSCVRLGFFSNPSTPRMQSHQPLSSPGLRCRTAQDATVNQSPTLHCKTSSSSSSTPKSAKSQRGILGSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGHGTAIYTAECGHAFHFPCIAAHVRNHATLVCPVCNTTWKDVPLLAAHKNLGPLTQHDPKPKIEDKTMIESSPRAVKTKLNPKEKEFRSYDDDEPLLSPTSGGRIIPIPEADENQDDVEEFQGFFVDPKPPSSSVKSSIQRTNVQVRLLPETALISSGHTHETYAVALKVKAPPPHPARNRANANLLDPSRRAPIDLVTVLDVSGSMTGPKLMMLKRAMRLVISSLGSSDRLAIVAFSATPKRVLPLRRMTAQGQRAARHVIDTLVCSQGTSVGEALRKATKVLEDRRERNPVASIMLLSDGQDERIQSNQRQVTRHESSTRFAHIEIPVHAFGFGKSGGYCQEPAEDAFAKCVSGLLSVVVQDLRIQLGFSSGSSPVVISAIYSCTGRPTVCSLGSVRLGDLYGEEERELLVELKIPTSASGTHHVMTMQCLYKDPSTQEVVYSREQDILIARPTAVGSSTPKIERLRDMFITTRAVAESRRLIEYEDHTSAHHLLASARALLIQSGSPSADVYVRELEVELAELHWRRQQQFELHQHQQQQQILVTTTPRRRGGDKENPTMVDENGEPLTPTSAWRAAEKLARVAIMKKSLTSRVGDLHGFENARF* 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20059330 20062317 + CsaV3_2G030520.1 Csa02g02233 520290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02233 745 CDD RING-H2 128 173 - -
Csa02g02233 745 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 745 - -
Csa02g02233 745 SUPERFAMILY RING/U-box 127 178 - -
Csa02g02233 745 Pfam von Willebrand factor type A domain 334 440 IPR002035 -
Csa02g02233 745 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 745 - -
Csa02g02233 745 ProSiteProfiles VWFA domain profile. 333 520 IPR002035 -
Csa02g02233 745 SMART VWA_4 331 512 IPR002035 -
Csa02g02233 745 SUPERFAMILY vWA-like 331 488 IPR036465 -
Csa02g02233 745 SMART ring_2 128 172 IPR001841 -
Csa02g02233 745 MobiDBLite consensus disorder prediction 1 110 - -
Csa02g02233 745 Gene3D von Willebrand factor, type A domain 333 493 IPR036465 -
Csa02g02233 745 MobiDBLite consensus disorder prediction 222 242 - -
Csa02g02233 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 233 IPR013083 -
Csa02g02233 745 ProSiteProfiles Zinc finger RING-type profile. 128 173 IPR001841 -
Csa02g02233 745 CDD vWA_C3HC4_type 332 499 - -
Csa02g02233 745 MobiDBLite consensus disorder prediction 678 709 - -
Csa02g02233 745 Pfam RING-like zinc finger 128 157 IPR001841 -
Csa02g02233 745 MobiDBLite consensus disorder prediction 10 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02233 - - - csv:101220853 1394.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01384 Csa-Chr1:9325661 Csa02g02233 Csa-Chr2:20059330 4.33E-83 transposed
Csa06g01205 Csa-Chr6:10219586 Csa02g02233 Csa-Chr2:20059330 7.60E-84 transposed
Csa06g02267 Csa-Chr6:20319968 Csa02g02233 Csa-Chr2:20059330 8.67E-77 transposed
Csa06g03418 Csa-Chr6:28251275 Csa02g02233 Csa-Chr2:20059330 2.20E-37 transposed
Csa02g02233 Csa-Chr2:20059330 Csa06g03081 Csa-Chr6:26445978 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66