Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02236 ATGGTGATGCCGGAGTCGTCTGAAGGTCACCGTACGGCTTCTCGGCGAGCAAATCGACCGCTTGTCGGACCTAGGGTTCCACTGAGACGGTTACTAAGAGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTTGGTATTCCTCACGCCTGGTCTAGTCTTATATGGCTCTGTGGACCGATTTCTGGTCTCTTTGTTCAACCGCTCGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGTCGTCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCTATAGTACTCGCTGTTTTGGTTATTGGTCACTCTGCAGACCTTGGTTGGTGGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGTATTCTTTGTGGTTGGCTTTTGGATTCTCGATGTAGCTAACAACGTCTCCCAAGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATTGCTGTTGGTAATATTTTTGGATATGCAACTGGATCTGTTAGTGGCTTGTACAAGATCTTCCCATTTACTCTCACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGTGTATCGGCAGCTCAAGAGATACCTCTAGTTTCAAACGACAGGTCCTCCCTGGTTGTAGAAGAAAGTATGGGGGAGTCAGGTCATGCTTCAGAAGCATTTTTCTGGGACTTGTTTCACACTTTTAGACACTTCTCTGGTTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTTCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGACTTATAGTTCGGGAGTCAGAATGGGAGCATTTGGTCTGTTGTGTAACTCTGTTGTCCTCGGAATAACTTCACTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTTATGGGTATATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATATAGGTCACGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGCGCTGAATCTTTACAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTGGTGCTCAGAACCCCAGAAACCTCACATGA 1512 45.5 MVMPESSEGHRTASRRANRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPISGLFVQPLVGHMSDHCTSRYGRRRPFIVAGALSIVLAVLVIGHSADLGWWIGDRGDVRPRAIVFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAVGNIFGYATGSVSGLYKIFPFTLTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQEIPLVSNDRSSLVVEESMGESGHASEAFFWDLFHTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQTYSSGVRMGAFGLLCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMGICFLTILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRAESLQLGQGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQNPRNLT* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20093960 20100618 - CsaV3_2G030550.1 Csa02g02236 520293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02236 503 TIGRFAM GPH_sucrose: sucrose/H+ symporter 26 494 IPR005989 GO:0005887|GO:0008515|GO:0015770
Csa02g02236 503 Gene3D MFS general substrate transporter like domains 28 490 IPR036259 -
Csa02g02236 503 SUPERFAMILY MFS general substrate transporter 29 494 IPR036259 -
Csa02g02236 503 Pfam MFS/sugar transport protein 44 232 - -
Csa02g02236 503 PANTHER SUGAR TRANSPORTER 10 501 - -
Csa02g02236 503 CDD MFS_SLC45_SUC 31 489 - -
Csa02g02236 503 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 10 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02236 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 978.008
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00853 Csa-Chr2:7858083 Csa02g02236 Csa-Chr2:20093960 1.63E-157 dispersed
Csa02g00855 Csa-Chr2:7878090 Csa02g02236 Csa-Chr2:20093960 1.29E-93 dispersed
Csa02g02236 Csa-Chr2:20093960 Csa05g01698 Csa-Chr5:20184545 7.83E-153 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G22710 63.0 7.5e-175 610.5
Csa02g02236 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.0 1.0e-139 493.8
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G22710 65.0 1.8e-96 350.1
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G22710 52.0 3.0e-54 209.9
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.1 8.5e-176 613.6
Csa02g02236 . 21 492 Sucrose Transporter Gene Family AT2G14670 51.6 1.3e-136 483.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT2G14670 65.9 4.2e-98 355.5
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT2G14670 54.1 1.9e-50 197.2
Csa02g00853 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.1 2.0e-147 519.2
Csa02g02236 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 7.3e-113 404.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G66570 64.7 9.6e-97 350.9
Csa05g01698 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 4.6e-187 651.0
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT5G06170 61.3 3.7e-163 571.6
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 2.4e-130 462.6
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT5G06170 65.1 6.7e-96 348.2
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.9 1.8e-173 605.9
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.9 2.4e-133 472.6
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT5G43610 65.5 3.0e-96 349.4
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT5G43610 54.1 5.6e-50 195.7
Csa02g02236 . 14 499 Sucrose Transporter Gene Family AT1G09960 70.6 1.9e-202 702.2
Csa02g00853 . 8 481 Sucrose Transporter Gene Family AT1G09960 51.5 3.5e-132 468.8
Csa02g00855 . 8 231 Sucrose Transporter Gene Family AT1G09960 61.1 2.9e-78 289.7
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G71880 61.7 9.9e-167 583.6
Csa02g02236 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 1.4e-133 473.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G71880 61.5 4.0e-91 332.4
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71880 54.5 7.8e-55 211.8
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT1G71890 60.7 1.6e-164 576.2
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT1G71890 62.3 1.8e-91 333.6
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71890 50.4 6.8e-51 198.7
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G71880 61.7 9.9e-167 583.6
Csa02g02236 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 1.4e-133 473.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G71880 61.5 4.0e-91 332.4
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71880 54.5 7.8e-55 211.8
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G22710 63.0 7.5e-175 610.5
Csa02g02236 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.0 1.0e-139 493.8
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G22710 65.0 1.8e-96 350.1
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G22710 52.0 3.0e-54 209.9
Csa05g01698 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 4.6e-187 651.0
Csa02g02236 . 14 499 Sucrose Transporter Gene Family AT1G09960 70.6 1.9e-202 702.2
Csa02g00853 . 8 481 Sucrose Transporter Gene Family AT1G09960 51.5 3.5e-132 468.8
Csa02g00855 . 8 231 Sucrose Transporter Gene Family AT1G09960 61.1 2.9e-78 289.7
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT1G71890 60.7 1.6e-164 576.2
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT1G71890 62.3 1.8e-91 333.6
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71890 50.4 6.8e-51 198.7
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.9 1.8e-173 605.9
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.9 2.4e-133 472.6
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT5G43610 65.5 3.0e-96 349.4
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT5G43610 54.1 5.6e-50 195.7
Csa02g00853 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.1 2.0e-147 519.2
Csa02g02236 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 7.3e-113 404.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G66570 64.7 9.6e-97 350.9
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.1 8.5e-176 613.6
Csa02g02236 . 21 492 Sucrose Transporter Gene Family AT2G14670 51.6 1.3e-136 483.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT2G14670 65.9 4.2e-98 355.5
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT2G14670 54.1 1.9e-50 197.2
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT5G06170 61.3 3.7e-163 571.6
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 2.4e-130 462.6
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT5G06170 65.1 6.7e-96 348.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30