Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02236 ATGGTGATGCCGGAGTCGTCTGAAGGTCACCGTACGGCTTCTCGGCGAGCAAATCGACCGCTTGTCGGACCTAGGGTTCCACTGAGACGGTTACTAAGAGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTTGGTATTCCTCACGCCTGGTCTAGTCTTATATGGCTCTGTGGACCGATTTCTGGTCTCTTTGTTCAACCGCTCGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGTCGTCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCTATAGTACTCGCTGTTTTGGTTATTGGTCACTCTGCAGACCTTGGTTGGTGGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGTATTCTTTGTGGTTGGCTTTTGGATTCTCGATGTAGCTAACAACGTCTCCCAAGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATTGCTGTTGGTAATATTTTTGGATATGCAACTGGATCTGTTAGTGGCTTGTACAAGATCTTCCCATTTACTCTCACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGTGTATCGGCAGCTCAAGAGATACCTCTAGTTTCAAACGACAGGTCCTCCCTGGTTGTAGAAGAAAGTATGGGGGAGTCAGGTCATGCTTCAGAAGCATTTTTCTGGGACTTGTTTCACACTTTTAGACACTTCTCTGGTTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTTCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGACTTATAGTTCGGGAGTCAGAATGGGAGCATTTGGTCTGTTGTGTAACTCTGTTGTCCTCGGAATAACTTCACTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTTATGGGTATATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATATAGGTCACGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGCGCTGAATCTTTACAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTGGTGCTCAGAACCCCAGAAACCTCACATGA 1512 45.5 MVMPESSEGHRTASRRANRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPISGLFVQPLVGHMSDHCTSRYGRRRPFIVAGALSIVLAVLVIGHSADLGWWIGDRGDVRPRAIVFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAVGNIFGYATGSVSGLYKIFPFTLTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQEIPLVSNDRSSLVVEESMGESGHASEAFFWDLFHTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQTYSSGVRMGAFGLLCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMGICFLTILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRAESLQLGQGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQNPRNLT* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20093960 20100618 - CsaV3_2G030550.1 Csa02g02236 520293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02236 503 TIGRFAM GPH_sucrose: sucrose/H+ symporter 26 494 IPR005989 GO:0005887|GO:0008515|GO:0015770
Csa02g02236 503 Gene3D MFS general substrate transporter like domains 28 490 IPR036259 -
Csa02g02236 503 SUPERFAMILY MFS general substrate transporter 29 494 IPR036259 -
Csa02g02236 503 Pfam MFS/sugar transport protein 44 232 - -
Csa02g02236 503 PANTHER SUGAR TRANSPORTER 10 501 - -
Csa02g02236 503 CDD MFS_SLC45_SUC 31 489 - -
Csa02g02236 503 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 10 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00853 Csa-Chr2:7858083 Csa02g02236 Csa-Chr2:20093960 1.63E-157 dispersed
Csa02g00855 Csa-Chr2:7878090 Csa02g02236 Csa-Chr2:20093960 1.29E-93 dispersed
Csa02g02236 Csa-Chr2:20093960 Csa05g01698 Csa-Chr5:20184545 7.83E-153 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02236 K15378 - csv:101220384 978.008