Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02237 ATGGCTTTTCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCATTCCTCCTTCTCAAGCTCTTACTCCTGCTATTACTAACCAGTCTCAGTTCTTCAATCTTATACAAAAGACTGCCTCAGGAGAGTTCCTGTCTGATTGGAATCTTTCAGGAGGCAAATCCTTCTGCAACTTCACAGGAATTCGGTGCAATGACCAAGGACATATCATTGAGATTGATATCTCTGGCCAGTCTCTCTCTGGGAGCTTTCCGGAAGATGTATGCTCTTACCTGCCAAAGCTGAGAGTTCTTCGTCTTGCTGGTACCGGTTTTTACGGACGTTTTCCTTCAGGAATCACCAACTGCTCTCTTATTGAAGAACTTAACATGAGCTCTTTGTATCTCAATGGAACTATCCCGGATTTATCACAAATGAAACAGCTGCGTGTACTTGACCTCTCATACAATTCCTTTACCGGTGATTTTCCCATGTCGGTTTTCAACCTTGTTAATCTTGAGGAGCTGAATTTCAATGAAAATTACAAACTCAACTTATGGAAGTTGCCTGACAAGATCTCCAGTCTGACAAAGCTAAAATCTATGGTCTTGACAACCTGTATGTTAGATGGCGAAATCCCACGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTGTTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACGGGAAACATACCAGAGGAGCTTGGAAATTTAACAGAGCTGGTGGACATGGACATGTCAGTAAACCTTCTGACGGGAGAGCTTCCAGAATCCATTTGTAAACTCCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAATGTGCTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCTCAAAAGTTAGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCAGAAAATCGCCTGTCTGGGCCATTGCCATTGGATATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTTCTAAATAGCCTTTCTGGAGAAATACCATCAAGCTATGCTGAATGTGTTTCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGACGGGAACAATACCTGAAGGAGTTTTGGGTCTTCCCCATGTTTCAATTATTGATGTTGCTCAAAATAAGCTCACTGGTTCCATTTCAAACTCTATCTCACAAGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCAGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGATCTTAGCAACAATCTTCTCTCTGGTCCAGTGCCATCACAGATTGGCGATCTGATGAAACTAAATCAGGTAATGTTACAAGGAAACCAACTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAGTCTCTCAACGTTCTTGATCTCTCGAACAATCGTTTAACCGGGAAAATTCCAGAAAGTTTGAGTGAATTGTTCCCAAGTTCTTTCAATTTTTCGAACAATCAACTTTCGGGTCCAATTCCTTTGTCTTTGATTAAACAAGGGTTAGCAGATAGCTTTTTCGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCAGACCAAAAATTCCCCATTTGTTCAAATTTTTCCTTTAGAAAACGTCTAAATTTCATCTGGGGTATCGTCATTCCATTGATCGTCTTCTTCACCTGTGCCGTCCTGTTTCTAAAACGACGAATCGCAACAAGAAAAACATCAGAGATCAAAAACGAAGAAGCCCTGTCTTCTTCTTTCTTCCATTTACAGAGCTTCGACCAAAGCATGATTCTCGAAGCCATGGTGGAAAAGAACATTGTGGGTCACGGTGGATCAGGAACAGTTTACAAAATCGAGCTTGGAAATGGAGAAATCTTCGCCGTGAAGAGGCTATGGAATCGAAGAGCAAAACATCTCTTCGATAAAGAATTGAAAACAGAGGTCGAAACCCTAGGAACAATTAGGCATAAGAACATCGTGAAACTCTATAGCTATTTTTCAGGTCTAAATAGCAGCCTTCTTGTTTACGAATACATGCCAAACGGAAATCTATGGGACGCCCTTCATAAAGGGTGGATTCATCTTGATTGGCCCAAGCGCCACCGCATCGCGGTGGGAATCGCTCAAGGTCTCGCTTATCTCCACCACGACCTCTCGCCGCCGGTAATTCACAGAGATATCAAAACCACAAACATTCTATTAGATGCAAATTACCAACCCAAAGTTGCAGATTTCGGGATCGCTAAAGTCCTACAAGGAACTAAGGATTCAACGAACTCTGTAATCGCAGGGACATACGGCTATTTAGCTCCTGAATATGCATATTCATCAAAGGCAACAACCAAGTGCGATGTGTACAGCTTTGGAGTAGTGTTAATGGAGTTGATAACAGGGAAGAAGCCGATTGAAACCGAGTATGGAGAAAACAAGAACATTGTGTTCTGGGTTTCGAACAAAGTGGATACAAAAGAAGGGGTTCTTGAAATTCTTGACAATAAATTAAAAGGGTTGTTTAAGGATGACATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATAGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCATCCCTTCGAAGATGTTGAAAAAGGAGAAGATACGTATATGATGTCACTAAAATAA 2829 41.36 MAFHSAFFLLLFFTTFSIPPSQALTPAITNQSQFFNLIQKTASGEFLSDWNLSGGKSFCNFTGIRCNDQGHIIEIDISGQSLSGSFPEDVCSYLPKLRVLRLAGTGFYGRFPSGITNCSLIEELNMSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFNLVNLEELNFNENYKLNLWKLPDKISSLTKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEELGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPNVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLLNSLSGEIPSSYAECVSLLRFRISFNQLTGTIPEGVLGLPHVSIIDVAQNKLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGDLMKLNQVMLQGNQLDSSIPTSFTSLKSLNVLDLSNNRLTGKIPESLSELFPSSFNFSNNQLSGPIPLSLIKQGLADSFFGNPNLCVPPAYFISPDQKFPICSNFSFRKRLNFIWGIVIPLIVFFTCAVLFLKRRIATRKTSEIKNEEALSSSFFHLQSFDQSMILEAMVEKNIVGHGGSGTVYKIELGNGEIFAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLNSSLLVYEYMPNGNLWDALHKGWIHLDWPKRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANYQPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDNKLKGLFKDDIIKALRIAIRCTYKNPVLRPAIGEVVQLLQEVDPCKFDHPFEDVEKGEDTYMMSLK* 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20106593 20111098 + CsaV3_2G030560.1 Csa02g02237 520294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02237 942 PRINTS Leucine-rich repeat signature 458 471 - -
Csa02g02237 942 PRINTS Leucine-rich repeat signature 503 516 - -
Csa02g02237 942 Gene3D Ribonuclease Inhibitor 32 179 IPR032675 -
Csa02g02237 942 SMART LRR_typ_2 432 455 IPR003591 -
Csa02g02237 942 SMART LRR_typ_2 287 310 IPR003591 -
Csa02g02237 942 SMART LRR_typ_2 239 263 IPR003591 -
Csa02g02237 942 SMART LRR_typ_2 503 527 IPR003591 -
Csa02g02237 942 SMART LRR_typ_2 165 191 IPR003591 -
Csa02g02237 942 Gene3D Ribonuclease Inhibitor 180 283 IPR032675 -
Csa02g02237 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Csa02g02237 942 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 927 - -
Csa02g02237 942 Gene3D Ribonuclease Inhibitor 292 573 IPR032675 -
Csa02g02237 942 SUPERFAMILY RNI-like 71 353 - -
Csa02g02237 942 SUPERFAMILY Protein kinase-like (PK-like) 627 915 IPR011009 -
Csa02g02237 942 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 1 927 - -
Csa02g02237 942 Pfam Protein kinase domain 648 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02237 942 SUPERFAMILY L domain-like 253 574 - -
Csa02g02237 942 SMART serkin_6 646 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02237 942 Gene3D Phosphorylase Kinase; domain 1 631 723 - -
Csa02g02237 942 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Csa02g02237 942 ProSiteProfiles Protein kinase domain profile. 646 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02237 942 Gene3D Transferase(Phosphotransferase) domain 1 724 929 - -
Csa02g02237 942 ProSiteProfiles Leucine-rich repeat profile. 505 527 IPR001611 GO:0005515
Csa02g02237 942 Pfam Leucine Rich Repeat 506 527 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02237 Csa03g04527 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02237 Csa-Chr2:20106593 Csa03g04527 Csa-Chr3:39472827 0 dispersed
Csa01g03097 Csa-Chr1:26915091 Csa02g02237 Csa-Chr2:20106593 6.73E-11 transposed
Csa06g00777 Csa-Chr6:6242040 Csa02g02237 Csa-Chr2:20106593 4.07E-44 transposed
Csa02g02237 Csa-Chr2:20106593 Csa03g04526 Csa-Chr3:39463518 0 wgd
Csa02g02237 Csa-Chr2:20106593 Csa06g03068 Csa-Chr6:26350693 1.32E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77922 PF00069 Pkinase 2.20E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02237 - - csv:101220145 1832.77