Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02242 ATGAACAGTGGGGCAAAGTCACTTGGTCCTATGCATTATGGGATTAAAAGTACCAGGCCATCTAAGGTAGAGGACAATTTTTCTTCCTGTACGAGCTTGCCTACTGGCAAGGCGTCACCTTTTGGCATCTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTCAGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTTAATACCTGTCTATCTAGGACTCTTAAAACTTCAAGTTTTCATGATTCGTCAGGCTTACCCATTGAGGGCGGTGAAGATCACAATGTAAACCAGAAAACCAATGACCAGAATGACAATGTCACAGTTTACTCTGCAAAAAAAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAATGGATAATGCTGATAAAATTGCTTCCCGGCTGCTGACTACAAGAGCTGTTAAAGAAAAAATCCATAGATCGACTGTATTTTCGAGAAAAAAATCATCTAATTCAAGTAAAAGAAGACTGATTGTTGCAATAAATGAAGCTGAAATGTCCACAGGGGTTAAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACCTTAGAAAAGGAATCTGGAAGAATAGCAAGCATGAGTTGTTGGGCTGAAGCTGCCAGTGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTCGTTCTGCCGGGATGAGCTTTTAAGGAGCACTAATTCATTAGTCGTGTTCCTGGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTTGAAAGGTTTGACCCTAAAAGGGGTTTTAGAATCTCAACATATATTCAATACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGGGGAATTCAAATTCCAAGGTCATTAACCAAGGCAATAAATCAGATACAAAAAGCACGAAAAGTGTTGAACCACAGTGGTAGGAGATATTCGGATGACGATATAGCAAGGGCTACTGGACTTCCTTTAGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGAATGATCAGAAGATGGGTGATGGAGTAAATATGAAATATATGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGAAAGACATCTTTAATATTCTTCAAAGGTTGGAATCAAGGGAGAGGCAGGTCCTGGTGCTGCGTTACGGACTTGTGGATTTTGAACCCAAGTCACTCGAGGAAATTGGAAAACTTCTGCACATAAGCAAGGAATGGGTTCGAAAAATAGAAAAGAAAGCTATGACAAAGCTGAAGAATGAAGAGACTGTGAAGCACTTGAGCCATTACTTGGATTGA 1422 40.3 MNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20147253 20151720 + CsaV3_2G030610.1 Csa02g02242 520299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02242 473 Pfam Sigma-70 region 2 245 310 IPR007627 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 238 461 IPR014284 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 CDD Sigma70_r4 402 460 - -
Csa02g02242 473 Gene3D - 313 464 - -
Csa02g02242 473 Gene3D - 110 310 - -
Csa02g02242 473 Pfam Sigma-70, region 4 409 460 IPR007630 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 Pfam Sigma-70 region 3 321 395 IPR007624 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 PRINTS Major sigma-70 factor signature 265 278 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 PRINTS Major sigma-70 factor signature 289 297 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 PRINTS Major sigma-70 factor signature 412 424 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 PRINTS Major sigma-70 factor signature 433 448 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 PRINTS Major sigma-70 factor signature 448 459 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 7 473 - -
Csa02g02242 473 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 7 473 - -
Csa02g02242 473 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 181 310 IPR013325 GO:0003700|GO:0006352|GO:0006355
Csa02g02242 473 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 372 462 IPR013324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02242 K03093 sigI; RNA polymerase sigma factor - csv:101206167 906.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02242 Csa-Chr2:20147253 Csa06g00636 Csa-Chr6:5321982 3.23E-65 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g42 . . . . . . . . . . . . . Car12g00215 Sed01g1245 Cpe07g00198 . Bhi04g00884 Tan02g2529 . . Hepe10g0389 . Lcy13g1443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01198 Cam08g1660 Cec08g1237 Cco08g1356 Clacu08g1357 . Cre08g1144 . Csa02g02242 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007971 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 0 1 2 2 1 1 1 1 1 1 0 1 3 5 1 36