Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02244 ATGGCTCGATTCCACTCCCGCTCCATTTCTCTTTTGTTTCTAGTGATTCTTGTTCTTGTTACAGTGTTTCGTTTTGTTCTCTCATCTACGGCCGACGATGAATTTTCCATTCTCGATTACGATGCGTTTCTTTTTCATCAGGATTACTCGCCGCCGGCCCCACCGCCACCGCCGCCTCATCCACCTTCAGTTTCCTGCACCGTTGATTTAGATGGTGTCGGTTCGTTGGATACTACATGTCAGATTGTCAACGATTTGAACCTTACTCATGACGTGTATATAGCCGGGAAGGGGAATTTTTATATCCTGCCTGGGGTGAAATTTAATTGTCTTAAACCAGGGTGTTCGATTACTATTAACATTACTGGCAATTTTACGTTGAGCAATGATTCGTCTATATTTACCGGGAGCTTTGAATTGGCCGCCTGTAATGCTAGTTTTCTTAATGGTTCTGTGGTGAACACGACGGCTTTGGCTGGGAATCCGCCGTCACAGACCAGTGGTACGCCACAAAGTGTTGATGGAGCAGGAGGGGGACATGGAGGGAGAGGAGCATGTTGTTTGACGGATAAAAGTAAGCTTCCCGAGGACGTTTGGGGAGGGGATGCGTACTCATGGGCATCGCTGCAGAAGCCTAGCAGTTTTGGTAGCCGAGGTGGTTCAACGAGCAAGGAGGTAGACTATAGTGGTAAGGGTGGCGGAAAGGTGAAGTTGAATGTTGCTGACCTTCTTGTAATTGATGGGGTTGTTCTGGCCGATGGTGGTGATGGGGGGACTAAAGGTGGAGGTGGGTCAGGTGGCAGCATCTATATCCTTGCTCACAAAATGATTGGCAATGGCAAGATAAGTGCCTGTGGAGGTGATGGATATGGTGGGGGAGGTGGTGGAAGAATCGCTGTCGACATTTTCAGCAGGCATGATGATCCTCAAATTTTTGTTCACGGGGGACGTAGTTTGGCTTGTCCAGAAAATTCTGGCGGTGCTGGAACTCTGTATGATGCTGTTCCTCGAAGCCTTACAATTTCCAATCATAACCTGACAACTGATACGGATACACTTCTTTTGGAGTTTCCTAATCAACCACTCATGACAAATGTTTATGTTCGAAACAATGCCAGGGCTTCAGTTCCTTTGCTCTGGAGTCGTGTTCAGGTTCAAGGTCAGATTAGCCTTCTATCTGGCGGAGTATTAAGTTTTGGGCTGGCACACTATGCCTCTTCAGAGTTTGAGCTATTGGCAGAAGAACTTTTAATGAGCAACTCAGAAATCAAGGTGTATGGGGCTCTACGCATGTCAGTGAAAATGTTTTTGATGTGGAATTCTAAATTGCTTATAGATGGAGGTGGGGATTCAGGCGTTGTAACATCCTTGCTTGAGGCCAGTAACTTAATTGTTCTTCGGGAATCATCTGTTATACATTCTAATGCTAACCTGGGAGTCCATGGACAAGGTTTATTGAACTTGTCAGGTCCTGGAGATTGGATTGAAGCCCAGCGGCTGGTTCTGTCTTTATTTTATAGTATTCATGTTGGCCCCGGATCTATTTTACGAGGGCCTGTAGATGATGCAACAAAAAATGCTGTAACTCCTAAGCTCTACTGTGAAGACAAAGACTGCCCCGTGGAACTATTTTATCCTCCTGAAGATTGCAATGTGAACTCATCACTTGCTTTCACTCTCCAGATCTGCAGAGTTGAAGATATCACTGTAGAGGGACTTATCAAAGGTTCGGTTGTTCATTTCCACAGGGCAAGAACAATAACTGTCCAGTCTCATGGGATGATCAGTGCATCTGGGATGGGGTGCACTGGAGGTGTGGGAAGAGGGAATGCCATAGGCAATGGTATATACAGTGGTGGTGGGTATGGTGGTAGAGGTGGGGTAGGATGCTTCGATAATAACTGTGTCCCAGGTGGCATCTCTTATGGGGAAGCAGATCTTCCCTGTGAGCTTGGTAGCGGTAGCGGAAATGACAGTTTAGCCAGTTTCTCTTCAGGAGGAGGCATTATAGTGATGGGCTCATTAGCGCATCCGTTGTCAAGCTTGCTCATTGAAGGCTCAGTGACATCTGATGGAGACAATTTCAACGGAACTGCAGGAGTAAAAAAGTTGACTGATATTCAAGAGTCTACAGGCCCTGGGGGAGGATCTGGTGGAACTATTCTTTTGTTTGTTCATACCATGGCTCTTCGTTCATCTGCTATTCTTTCAAGTGCTGGTGGATATAGTCTAGCAAATGGAAGTGGTGGAGGTGGTGGAGGAAGGATTCACTTTCACTGGGCCGACATACCTACAGGAGACGTGTACCAGCCCATTGCTAGTGTGAAAGGACACATTGGTACCCGTGGAGGTACAGCTGGTGAACTGGGTGGTGGTGGTGAAGATGGCACTGTGACTGGGAAAGCGTGCCCTAAAGGTCTTTATGGAACATTTTGTGAGGAATGTCCTGCGGGTACATTCAAGAATGTCAGTGGATCCGATAGATCTCTTTGTCGACAATGCCCCCCTGATGAGCTTCCACATCGTGCTATTTATGTATCTGTTCGGGGTGGGATTGCTGAAACGCCATGCCCTTACAGATGCATTTCAGATAGATACCATATGCCGAAATGTTATACTGCTCTTGAAGAGTTAATTTATACATTTGGTGGTCCTTGGCTCTTTTGTGGTCTCCTACTTGGCCTGCTTGTTCTGCTGGCATTGGTGCTTAGTGTTGCACGGATGAAATTTGTCGGGGTGGATGAGCTACCTGGCCCTGTACCCACTCAACATGGATCTCAAATTGATCATTCCTTTCCTTTCCTGGAGTCATTGAATGAGGTCTTAGAAACAAATAGAGCTGAGGAATCTCAAAGTCATGTGTATAGAATGTACTTTACGGGTCCAAACACCTTTAGTGAACCGTGGCATCTTTCACACTCCCCTCCGGAACAACTCAAAGAGATTGTATATGAGAGTGCATTTAATACATTTGTGGATGAGATCAATGCTATAGCAGCATATCAATGGTGGGAGGGTGCAGTATACAGCATTCTTTCTGCTCTTGCATATCCTCTTGCATGGTCATGGCAGCAATGGCGTCGAAGGCTGAAATTGCAACTTCTACGTGAGTTTGTTAGGTCAGAATATGACCATGCTTGCTTGCGATCTTGCCGCTCCCGTGCTCTTTATGAAGGCATTAAGGTTGCGGCAACATCCGATCTAATGCTTGCATTTGTGGACTTCTTTCTGGGTGGAGACGAAAAAAGAACCGATCTTCCTCCTCGTTTGAATCAAAGATTTCCACTGGCTTTACTTTTTGGAGGCGATGGAAGTTACATGGCTTCTTTTTCACTTCATAACGACAACATTCTTACTAGTCTCATGAGCCAGGTTCTACCACCTACAACATGGTACCGCATGGTTGCTGGCCTGAATGCACAGTTACGGTTGGTTCGTCGTGGTCAGCTTAAATCAACATTTCTACCTGTTGTTAGATGGCTGGAAAATGTTGCAAATCCTGCTTTGAGGAATCATGGCATTTGTGTGGATCTTGCGTGGTTTCAGGCTACAACCTGTGGTTATTGCCAGTACGGTCTTGTTATATATGCTGCTGAAGACATCAGTCCTCCGGCCATAAGAAGTTATCATGAATATGAACAATATGATCAAACTTCACGTGTGAAGGACATTCCAAGAGAAAATCAGTCTCTGCATTCGAGGGAAGAAACACATATAAGACAAGATCATATTTCTAGTGAAGGCCGTGCAAGGCGAAAGAAGTCATATGGGGGCATTTTAGATGTCAGCAGTCTACAAATGCTCCAGGAGAAGAGGAGTATATCTTGCATTCTATCTTATGTGCTTCACAACACTAAACCTGTTGGCCACCAGGATCTTGTTGGTTTAGTCATATCAATGCTGCTACTAGGGGATTTCAGCTTGGTTTTGCTTACGCTGCTCCAGATGTTTTCTTTCTCATTGGCAGACGTTTTTCTAGTTTTGTTTATTTTGCCGCTCGGCATTCTCCTTCCATTCCCTGCTGGAATCAATGCCTTATTTAGCCAAGGACCTAGGCGTTCTGCAGGCCTCGCCCGCATCTATGCATTGTGGAACATCACATCCTTGGTCAATGTTTTGGTTGCATTTCTCTGTGGATATGTTCACTCAAAATCTCAATCCTCGAAACATCCAAGCTATCAGCCATGGACTATTAACATGGATGAAAGTGAATGGTGGATCTTCCCAGCGGGATTGGTTGTTTGTAAATTTCTCCAATCCCGACTCATTAATTGGCACGTTGCGAATCTCGAGATCCAAGATCGATCCTTGTACAGTAACGAGTTCGATATGTTCTGGCAGTCGTGA 4347 45.55 MARFHSRSISLLFLVILVLVTVFRFVLSSTADDEFSILDYDAFLFHQDYSPPAPPPPPPHPPSVSCTVDLDGVGSLDTTCQIVNDLNLTHDVYIAGKGNFYILPGVKFNCLKPGCSITINITGNFTLSNDSSIFTGSFELAACNASFLNGSVVNTTALAGNPPSQTSGTPQSVDGAGGGHGGRGACCLTDKSKLPEDVWGGDAYSWASLQKPSSFGSRGGSTSKEVDYSGKGGGKVKLNVADLLVIDGVVLADGGDGGTKGGGGSGGSIYILAHKMIGNGKISACGGDGYGGGGGGRIAVDIFSRHDDPQIFVHGGRSLACPENSGGAGTLYDAVPRSLTISNHNLTTDTDTLLLEFPNQPLMTNVYVRNNARASVPLLWSRVQVQGQISLLSGGVLSFGLAHYASSEFELLAEELLMSNSEIKVYGALRMSVKMFLMWNSKLLIDGGGDSGVVTSLLEASNLIVLRESSVIHSNANLGVHGQGLLNLSGPGDWIEAQRLVLSLFYSIHVGPGSILRGPVDDATKNAVTPKLYCEDKDCPVELFYPPEDCNVNSSLAFTLQICRVEDITVEGLIKGSVVHFHRARTITVQSHGMISASGMGCTGGVGRGNAIGNGIYSGGGYGGRGGVGCFDNNCVPGGISYGEADLPCELGSGSGNDSLASFSSGGGIIVMGSLAHPLSSLLIEGSVTSDGDNFNGTAGVKKLTDIQESTGPGGGSGGTILLFVHTMALRSSAILSSAGGYSLANGSGGGGGGRIHFHWADIPTGDVYQPIASVKGHIGTRGGTAGELGGGGEDGTVTGKACPKGLYGTFCEECPAGTFKNVSGSDRSLCRQCPPDELPHRAIYVSVRGGIAETPCPYRCISDRYHMPKCYTALEELIYTFGGPWLFCGLLLGLLVLLALVLSVARMKFVGVDELPGPVPTQHGSQIDHSFPFLESLNEVLETNRAEESQSHVYRMYFTGPNTFSEPWHLSHSPPEQLKEIVYESAFNTFVDEINAIAAYQWWEGAVYSILSALAYPLAWSWQQWRRRLKLQLLREFVRSEYDHACLRSCRSRALYEGIKVAATSDLMLAFVDFFLGGDEKRTDLPPRLNQRFPLALLFGGDGSYMASFSLHNDNILTSLMSQVLPPTTWYRMVAGLNAQLRLVRRGQLKSTFLPVVRWLENVANPALRNHGICVDLAWFQATTCGYCQYGLVIYAAEDISPPAIRSYHEYEQYDQTSRVKDIPRENQSLHSREETHIRQDHISSEGRARRKKSYGGILDVSSLQMLQEKRSISCILSYVLHNTKPVGHQDLVGLVISMLLLGDFSLVLLTLLQMFSFSLADVFLVLFILPLGILLPFPAGINALFSQGPRRSAGLARIYALWNITSLVNVLVAFLCGYVHSKSQSSKHPSYQPWTINMDESEWWIFPAGLVVCKFLQSRLINWHVANLEIQDRSLYSNEFDMFWQS* 1449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20153673 20167663 + CsaV3_2G030630.1 Csa02g02244 520301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02244 1448 MobiDBLite consensus disorder prediction 159 173 - -
Csa02g02244 1448 MobiDBLite consensus disorder prediction 1230 1250 - -
Csa02g02244 1448 MobiDBLite consensus disorder prediction 159 178 - -
Csa02g02244 1448 PANTHER - 8 1447 - -
Csa02g02244 1448 PANTHER EPHRIN TYPE-B RECEPTOR 8 1447 - -
Csa02g02244 1448 SMART GCC2_GCC3_2 809 857 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02244 - - - csv:101205923 2638.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00068 Csa-Chr2:501395 Csa02g02244 Csa-Chr2:20153673 0 dispersed
Csa02g02244 Csa-Chr2:20153673 Csa03g04655 Csa-Chr3:40421340 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g41 . . . . . . . . . . . . . Car12g00216 . Cpe07g00200 . Bhi04g00880 . . . Hepe10g0388 . Lcy13g1442 . . . . . . . . . . . . . . . . . . Bda13g01318 . . . Bma02g00074 . . . . . . . . . . . . . . . . Cla08g01199 Cam08g1661 Cec08g1238 Cco08g1357 Clacu08g1358 . Cre08g1145 . Csa02g02244 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001361 2 3 2 2 2 2 3 2 2 2 2 2 3 2 1 3 2 4 3 1 2 2 2 2 2 2 2 12 2 1 74