Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02250 ATGTCCAGAATTTCACTGCCATTTCTCACAACCCTACTCCCTGTTTACCTTTTCTACTTCATCTACATACAATTCCATGCAAGTTCACAAACTGTCAATGTAGACCAGGCCATCTTGCTTGATCTCAAAGAACAATGGGGGAATCCACCCTCTCTTTGGTTATGGAATGCCTCGTCCTTGCCCTGTGATTGGCCGGAGATCATCTGTAGAGACAGCACGGTCATTGGAATCTCTCTGAGGAACAAGACTATCACTGGGAAAGTCCCAACTGTCATATGTAACCTGCAAAATCTCACTGTGCTTGATCTTTCATGGAACTATATCCCTGGTGAGTTCCCAGAAGTTTTATACAACTGTTCCAAGCTCAAATATCTTGATCTTTCAGGAAACTATTTTGTGGGTCCAATACCCCAAGATGTAGACCGGCTTCAAACTCTACAGTACATGGACCTTAGCGCCAACAACTTCTCAGGCGATTTTCCGGCTGCGCTAGGGCAGTTGTCAGATTTGAGAACTTTAAAAATTTACAGAACTCAATGCAATGGCACATTGCCAGCTGAAATTGGCAACTTGTCCAATCTTGAAACTTTGAGCATGGCGTATAACACTTTGCTCGTCCCATCGCCAATACCAGAAGATTTCAGGAAACTGAAGAAGTTGAAATATATGTGGATGACAAAGTCCAATTTGATAGGTCAAATCCCAGAAAGCTTATTGGAACTTTTAAGCCTTGAACACTTGGATTTATCCAGTAACAACTTGATAGGTTCTATTCCTGTTGGGTTGTTCTCTTTGCAGAATTTAACCAACTTATTTCTCTACCAAAACCGATTGTCCGGAGAAATACCCAAGTCGATTCGAGCATCAAACTTACTCAATGTTGACCTCTCTACGAACAATTTAAGTGGCACGATCCCTGAAGATTTTGGGAAGTTAAAAAAGTTGCAGGTCTTGAACTTGTTTGCAAATCAGTTGTCTGGAGAGATTCCAGGAAGTCTAGGCCTCTTACCTGAACTGAAAGGTTTTCGTGTATTCAACAACAGCCTAACTGGAGGCTTGCCACAAGAATTGGGTCTGCACTCAAATCTGGAAGCATTGGAGGTTTCAATGAATAAACTAAGCGGTTCCTTACCTGAACATCTCTGTAAAAATAGCGTCTTACAGGGAGTAGTTGCTTTTTCCAACAATCTTAGTGGCAAATTGCCGAAAGGGCTTGGCAATTGTAGGACTTTACGAACAGTCCAGCTTTCTAACAACAACTTTTCTGGTGAAATTCCTCCAGGTCTTTGGACTACTTTCAATCTATCGAGCATAATGTTAGATGGAAATTCATTCTCAGGTGAGTTACCAGATAGCTTATCTTGGAATCTCTCGAGACTGGCAATAAATAACAACAAATTTTCGGGTCAAATTCCTCAAAATGTGTCAGCTTGGCGAAACTTGATTGTATTCGAGGCAAGCGACAATCTGCTTTCTGGTAAGTTCCCTGATGGATTGACAAGTCTTCCTCATCTTACCACACTTGTATTGAGTGGTAATCAACTCTCAGGCCAACTTCCAACGACAATTGGTTCGTGGGAATCATTGAATACTCTAAATCTCTCTAGAAATGAAATTTCAGGCCATATTCCTGCAGCATTTGGTTCTCTTCCTAACCTCCTATACCTGGATTTATCAGGTAATAACTTCACAGGTGAAATCCCACCTGAAATTGGCCACCTAAGACTGGCTTCCCTCAACTTGTCTTCCAATCAGCTTTCAGGGAAAATCCCAGATGAGTACGAGAATATAGCATATGGAAGGAGTTTCTTGAACAACCCCAAACTGTGTACTGCCATCGGTGTACTTGACCTTCCGAGCTGTTATTCTAGACAAATAGATTCAAAATATCAGTCCTTTAAATATCTTTCCCTCATTCTAGCTCTCACTGTTACCTTGCTCGTAATTGCTTTACTATGGATTATCATCCTATATAAAAGTTATTGTAAAAAGGATGAAAGATGCCACCCTGACACATGGAAGCTAACTTCATTCCAGAGATTGGAGTTCACAGAAACGAATATCTTGTCAAACTTGACAGAAACCAATCTGATCGGAAGTGGTGGATCCGGCAAAGTGTACTGCATAGACATCAACCATGCTGGTTATTATGTAGCTGTCAAAAGGATTTGGAGTAACAATGAGTTAGATAAAAAACTTGAGAAAGAATTTCAAGCAGAAGTTCAAATACTAGGCTCAATTCGGCATTCAAATATAGTGAAGCTGCTATGCTGCGTCTGGAATGAGAATTCAAAGCTTTTAGTCTATGAATACATGGAAAATCAGAGCCTAGATAGGTGGCTTCATAAAAAGAAGAAAAGGTTAACATCTGCAGCAATGAATTTTCTTGAGCAATCTGTCTTAGACTGGCCGCGGAGGTTGCAAATTGCTATTGGAGCTGCACAGGGCCTCAGTTATATGCACCATGATTGCTCTCCACCAATCATTCATCGAGATGTGAAGTCGAGTAATATCTTATTAGACCGTGAGTTTCAGGCAAAGATAGCAGATTTTGGGTTGGCCAAGATGCTCGCCAGTCAGGGAGAGCCCCACACCATCTCTGCAATAGCAGGATCATTTGGCTACATAGCCCCAGAGTATGCCTACACAACGAAAGTAAATGAGAAGATTGATGTCTATAGCTTTGGGGTTGTACTCCTGGAGCTTACAACAGGAAGGGAACCTAACAGTGGAGATGAGCACACAAGCCTAGCAGAATGGGCATGGCAGCAATATAGTGAGGGAAAAACTATTACTGATTCCCTTGATGAGGAAATTAAAAACCCATGCAACTTCGAAGAGATGAGTACTATGTTCAAACTTGGTCTAATTTGTACGAGCATGTTACCTGAAATACGACCTTCGATGAAAGAAGTTCTGCGTATTCTACGCCAATGCAGTCCTCCAGAAGCTTGTGATAGGAGAAAGCATGCCATTGAATTTGATGCTATTCCCCTCCTCGGCACTCCTCTATGA 3015 41.56 MSRISLPFLTTLLPVYLFYFIYIQFHASSQTVNVDQAILLDLKEQWGNPPSLWLWNASSLPCDWPEIICRDSTVIGISLRNKTITGKVPTVICNLQNLTVLDLSWNYIPGEFPEVLYNCSKLKYLDLSGNYFVGPIPQDVDRLQTLQYMDLSANNFSGDFPAALGQLSDLRTLKIYRTQCNGTLPAEIGNLSNLETLSMAYNTLLVPSPIPEDFRKLKKLKYMWMTKSNLIGQIPESLLELLSLEHLDLSSNNLIGSIPVGLFSLQNLTNLFLYQNRLSGEIPKSIRASNLLNVDLSTNNLSGTIPEDFGKLKKLQVLNLFANQLSGEIPGSLGLLPELKGFRVFNNSLTGGLPQELGLHSNLEALEVSMNKLSGSLPEHLCKNSVLQGVVAFSNNLSGKLPKGLGNCRTLRTVQLSNNNFSGEIPPGLWTTFNLSSIMLDGNSFSGELPDSLSWNLSRLAINNNKFSGQIPQNVSAWRNLIVFEASDNLLSGKFPDGLTSLPHLTTLVLSGNQLSGQLPTTIGSWESLNTLNLSRNEISGHIPAAFGSLPNLLYLDLSGNNFTGEIPPEIGHLRLASLNLSSNQLSGKIPDEYENIAYGRSFLNNPKLCTAIGVLDLPSCYSRQIDSKYQSFKYLSLILALTVTLLVIALLWIIILYKSYCKKDERCHPDTWKLTSFQRLEFTETNILSNLTETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNNELDKKLEKEFQAEVQILGSIRHSNIVKLLCCVWNENSKLLVYEYMENQSLDRWLHKKKKRLTSAAMNFLEQSVLDWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDREFQAKIADFGLAKMLASQGEPHTISAIAGSFGYIAPEYAYTTKVNEKIDVYSFGVVLLELTTGREPNSGDEHTSLAEWAWQQYSEGKTITDSLDEEIKNPCNFEEMSTMFKLGLICTSMLPEIRPSMKEVLRILRQCSPPEACDRRKHAIEFDAIPLLGTPL* 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20181979 20185426 - CsaV3_2G030690.1 Csa02g02250 520307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02250 1004 SUPERFAMILY L domain-like 42 383 - -
Csa02g02250 1004 Gene3D Ribonuclease Inhibitor 290 358 IPR032675 -
Csa02g02250 1004 Pfam Protein kinase domain 694 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02250 1004 Gene3D Ribonuclease Inhibitor 179 289 IPR032675 -
Csa02g02250 1004 Pfam Leucine Rich Repeat 243 259 IPR001611 GO:0005515
Csa02g02250 1004 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 994 - -
Csa02g02250 1004 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Csa02g02250 1004 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Csa02g02250 1004 ProSiteProfiles Leucine-rich repeat profile. 243 266 IPR001611 GO:0005515
Csa02g02250 1004 Gene3D Ribonuclease Inhibitor 31 178 IPR032675 -
Csa02g02250 1004 CDD STKc_IRAK 698 976 - -
Csa02g02250 1004 Gene3D Ribonuclease Inhibitor 360 630 IPR032675 -
Csa02g02250 1004 ProSiteProfiles Protein kinase domain profile. 692 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02250 1004 Gene3D Phosphorylase Kinase; domain 1 660 771 - -
Csa02g02250 1004 SUPERFAMILY Protein kinase-like (PK-like) 683 976 IPR011009 -
Csa02g02250 1004 Pfam Leucine Rich repeat 502 517 IPR001611 GO:0005515
Csa02g02250 1004 SUPERFAMILY RNI-like 288 622 - -
Csa02g02250 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Csa02g02250 1004 SMART serkin_6 692 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02250 1004 SMART LRR_typ_2 502 526 IPR003591 -
Csa02g02250 1004 SMART LRR_typ_2 191 216 IPR003591 -
Csa02g02250 1004 SMART LRR_typ_2 241 265 IPR003591 -
Csa02g02250 1004 SMART LRR_typ_2 312 336 IPR003591 -
Csa02g02250 1004 SMART LRR_typ_2 550 574 IPR003591 -
Csa02g02250 1004 SMART LRR_typ_2 95 119 IPR003591 -
Csa02g02250 1004 Gene3D Transferase(Phosphotransferase) domain 1 772 995 - -
Csa02g02250 1004 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 15 994 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01260 Csa-Chr1:7844689 Csa02g02250 Csa-Chr2:20181979 0 dispersed
Csa01g02866 Csa-Chr1:25191938 Csa02g02250 Csa-Chr2:20181979 8.52E-27 dispersed
Csa01g02868 Csa-Chr1:25199982 Csa02g02250 Csa-Chr2:20181979 0 dispersed
Csa02g02250 Csa-Chr2:20181979 Csa03g00702 Csa-Chr3:6319874 0 dispersed
Csa02g02250 Csa-Chr2:20181979 Csa03g04544 Csa-Chr3:39605940 3.76E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77923 PF00069 Pkinase 2.90E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02250 K00924 - csv:101219431 1975.67